Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 UPK3BP1-201ENST00000428678 509 ntBASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 KRT18P67-201ENST00000432816 1264 ntBASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AC098859.1-201ENST00000502915 1238 ntBASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 IFNL4P1-201ENST00000607083 540 ntBASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AC010507.1-201ENST00000633895 436 ntBASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 AJ011931.1-201ENST00000618749 2492 ntBASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 PCDHA3-202ENST00000532566 4594 ntBASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CCDC28BQ9BUN5 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 AC073389.1-201ENST00000595595 795 ntBASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 AC023141.13-201ENST00000604991 943 ntBASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 FAM215A-202ENST00000632077 792 ntBASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 AC126755.1-201ENST00000525846 6405 ntBASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.36■□□□□ 0.05
CCDC28BQ9BUN5 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CCDC28BQ9BUN5 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms