Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 AL137077.2-201ENST00000635124 1608 ntBASIC15.56■□□□□ 0.08
TTC28Q96AY4 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 MBLAC2-202ENST00000514906 1936 ntBASIC15.56■□□□□ 0.08
TTC28Q96AY4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 AC015912.3-201ENST00000619432 348 ntBASIC15.56■□□□□ 0.08
TTC28Q96AY4 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TTC28Q96AY4 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TTC28Q96AY4 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 AC106047.2-201ENST00000511723 743 ntBASIC15.55■□□□□ 0.08
TTC28Q96AY4 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 AC092299.1-201ENST00000632679 757 ntBASIC15.55■□□□□ 0.08
TTC28Q96AY4 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 AC009093.2-202ENST00000620513 2079 ntBASIC15.55■□□□□ 0.08
TTC28Q96AY4 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 PHKG1P2-201ENST00000457537 863 ntBASIC15.55■□□□□ 0.08
TTC28Q96AY4 AC113347.2-201ENST00000512350 279 ntBASIC15.55■□□□□ 0.08
TTC28Q96AY4 CCNC-217ENST00000523985 958 ntTSL 2 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 MT3-203ENST00000565838 421 ntTSL 3 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.55■□□□□ 0.08
TTC28Q96AY4 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TTC28Q96AY4 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 AC009113.1-201ENST00000570267 2443 ntBASIC15.54■□□□□ 0.08
TTC28Q96AY4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 AC073130.3-201ENST00000624389 2278 ntBASIC15.54■□□□□ 0.08
TTC28Q96AY4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TTC28Q96AY4 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.54■□□□□ 0.08
TTC28Q96AY4 NAV1-210ENST00000593583 726 ntBASIC15.54■□□□□ 0.08
TTC28Q96AY4 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms