Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AL353770.1-201ENST00000614915 403 ntBASIC21.01■□□□□ 0.95
NPHP3Q7Z494 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 EML3-212ENST00000494176 2901 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 EML3-216ENST00000529309 2909 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
NPHP3Q7Z494 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
NPHP3Q7Z494 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
NPHP3Q7Z494 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 FZD10-202ENST00000539839 3282 ntBASIC21■□□□□ 0.95
NPHP3Q7Z494 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
NPHP3Q7Z494 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
NPHP3Q7Z494 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC21■□□□□ 0.95
NPHP3Q7Z494 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC21■□□□□ 0.95
NPHP3Q7Z494 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC21■□□□□ 0.95
NPHP3Q7Z494 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC21■□□□□ 0.95
NPHP3Q7Z494 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC21■□□□□ 0.95
NPHP3Q7Z494 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
NPHP3Q7Z494 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP3Q7Z494 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 MIR648-201ENST00000385046 94 ntBASIC20.99■□□□□ 0.95
NPHP3Q7Z494 AC006335.1-201ENST00000445200 547 ntBASIC20.99■□□□□ 0.95
NPHP3Q7Z494 AC114501.1-201ENST00000445949 172 ntBASIC20.99■□□□□ 0.95
NPHP3Q7Z494 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 MARK2P5-201ENST00000507649 634 ntBASIC20.99■□□□□ 0.95
NPHP3Q7Z494 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 AC004923.1-202ENST00000642106 209 ntBASIC20.99■□□□□ 0.95
NPHP3Q7Z494 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC20.99■□□□□ 0.95
NPHP3Q7Z494 AC106820.2-201ENST00000563775 3264 ntBASIC20.99■□□□□ 0.95
NPHP3Q7Z494 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 HCG11-201ENST00000411553 5696 ntBASIC20.98■□□□□ 0.95
NPHP3Q7Z494 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 AC007787.1-201ENST00000588095 1583 ntBASIC20.98■□□□□ 0.95
NPHP3Q7Z494 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 AC004066.1-201ENST00000502488 802 ntBASIC20.98■□□□□ 0.95
NPHP3Q7Z494 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 RN7SL163P-201ENST00000583100 276 ntBASIC20.98■□□□□ 0.95
NPHP3Q7Z494 INO80C-210ENST00000590757 595 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 AC073352.2-201ENST00000609385 439 ntBASIC20.98■□□□□ 0.95
NPHP3Q7Z494 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP3Q7Z494 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 AL158070.2-201ENST00000623713 1621 ntBASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms