Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 RPL37AP1-201ENST00000412502 279 ntBASIC18.82■□□□□ 0.6
RNF20Q5VTR2 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 AC125807.1-201ENST00000483097 614 ntBASIC18.82■□□□□ 0.6
RNF20Q5VTR2 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 AL033527.5-202ENST00000641632 1098 ntBASIC18.82■□□□□ 0.6
RNF20Q5VTR2 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
RNF20Q5VTR2 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 TARDBPP1-201ENST00000442013 1203 ntBASIC18.81■□□□□ 0.6
RNF20Q5VTR2 KLF2P3-201ENST00000451977 1087 ntBASIC18.81■□□□□ 0.6
RNF20Q5VTR2 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 AC067863.1-201ENST00000494933 530 ntBASIC18.81■□□□□ 0.6
RNF20Q5VTR2 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
RNF20Q5VTR2 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.8■□□□□ 0.6
RNF20Q5VTR2 SPDYE12P-201ENST00000618416 771 ntBASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms