Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 SUPT4H1P2-201ENST00000501248 353 ntBASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 LINC02447-202ENST00000501888 2146 ntBASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.91■□□□□ 0.62
CCDC88AQ3V6T2 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 AC116345.2-201ENST00000512837 523 ntBASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 AC148477.4-201ENST00000613430 1793 ntBASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 RN7SL736P-201ENST00000613111 269 ntBASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC88AQ3V6T2 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.89■□□□□ 0.62
CCDC88AQ3V6T2 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC88AQ3V6T2 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 PRKXP1-201ENST00000561423 1122 ntBASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CCDC88AQ3V6T2 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 CRCP-204ENST00000398684 492 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 KLF2P2-201ENST00000416807 1039 ntBASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 MSRA-203ENST00000441698 788 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC88AQ3V6T2 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms