Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
TPM4P67936 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM4P67936 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
TPM4P67936 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.72■□□□□ 0.43
TPM4P67936 VN2R19P-201ENST00000442399 1052 ntBASIC17.72■□□□□ 0.43
TPM4P67936 FAM197Y8-203ENST00000450145 560 ntBASIC17.72■□□□□ 0.43
TPM4P67936 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.72■□□□□ 0.43
TPM4P67936 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 AC012640.2-201ENST00000561606 901 ntBASIC17.72■□□□□ 0.43
TPM4P67936 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.72■□□□□ 0.43
TPM4P67936 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
TPM4P67936 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TPM4P67936 CICP4-201ENST00000447359 2812 ntBASIC17.72■□□□□ 0.43
TPM4P67936 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TPM4P67936 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM4P67936 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.71■□□□□ 0.43
TPM4P67936 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM4P67936 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TPM4P67936 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM4P67936 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.71■□□□□ 0.43
TPM4P67936 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.71■□□□□ 0.43
TPM4P67936 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
TPM4P67936 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 CRYGEP-201ENST00000412192 528 ntBASIC17.71■□□□□ 0.43
TPM4P67936 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.71■□□□□ 0.43
TPM4P67936 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
TPM4P67936 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.71■□□□□ 0.43
TPM4P67936 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.71■□□□□ 0.43
TPM4P67936 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
TPM4P67936 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.71■□□□□ 0.43
TPM4P67936 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TPM4P67936 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM4P67936 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TPM4P67936 AC007064.4-201ENST00000637740 555 ntBASIC17.71■□□□□ 0.43
TPM4P67936 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
TPM4P67936 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC17.71■□□□□ 0.43
TPM4P67936 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
TPM4P67936 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM4P67936 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC17.71■□□□□ 0.43
TPM4P67936 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TPM4P67936 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
TPM4P67936 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
TPM4P67936 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
TPM4P67936 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
TPM4P67936 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
TPM4P67936 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.71■□□□□ 0.42
TPM4P67936 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM4P67936 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM4P67936 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC17.7■□□□□ 0.42
TPM4P67936 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC17.7■□□□□ 0.42
TPM4P67936 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TPM4P67936 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM4P67936 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
TPM4P67936 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM4P67936 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.7■□□□□ 0.42
TPM4P67936 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TPM4P67936 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
TPM4P67936 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.7■□□□□ 0.42
TPM4P67936 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.7■□□□□ 0.42
TPM4P67936 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.7■□□□□ 0.42
TPM4P67936 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.7■□□□□ 0.42
TPM4P67936 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TPM4P67936 AC018712.1-201ENST00000455767 687 ntBASIC17.7■□□□□ 0.42
TPM4P67936 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms