Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 AC006504.5-208ENST00000588784 2401 ntBASIC11.9□□□□□ -0.5
FOXA3P55318 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 CD99-202ENST00000381180 530 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC11.9□□□□□ -0.5
FOXA3P55318 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC11.9□□□□□ -0.5
FOXA3P55318 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC11.9□□□□□ -0.5
FOXA3P55318 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 STK33-217ENST00000534493 1895 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC11.9□□□□□ -0.5
FOXA3P55318 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC11.9□□□□□ -0.5
FOXA3P55318 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
FOXA3P55318 AC016734.2-201ENST00000624325 1377 ntBASIC11.9□□□□□ -0.5
FOXA3P55318 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
FOXA3P55318 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
FOXA3P55318 AC131212.3-201ENST00000624087 4219 ntBASIC11.9□□□□□ -0.51
FOXA3P55318 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
FOXA3P55318 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
FOXA3P55318 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
FOXA3P55318 KRT18P1-202ENST00000452408 1331 ntBASIC11.89□□□□□ -0.51
FOXA3P55318 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
FOXA3P55318 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
FOXA3P55318 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC11.89□□□□□ -0.51
FOXA3P55318 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 C1R-201ENST00000535233 2211 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
FOXA3P55318 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC11.89□□□□□ -0.51
FOXA3P55318 PTCHD3P3-201ENST00000403073 906 ntBASIC11.89□□□□□ -0.51
FOXA3P55318 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 THAP5-204ENST00000438865 868 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC11.89□□□□□ -0.51
FOXA3P55318 AC063952.2-201ENST00000498792 1227 ntBASIC11.89□□□□□ -0.51
FOXA3P55318 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
FOXA3P55318 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC11.89□□□□□ -0.51
FOXA3P55318 AC021097.1-201ENST00000607902 574 ntBASIC11.89□□□□□ -0.51
FOXA3P55318 AC012306.2-201ENST00000609350 630 ntBASIC11.89□□□□□ -0.51
FOXA3P55318 AC091076.1-201ENST00000610741 619 ntBASIC11.89□□□□□ -0.51
FOXA3P55318 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC11.89□□□□□ -0.51
FOXA3P55318 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
FOXA3P55318 OS9-204ENST00000389146 2091 ntTSL 2 BASIC11.89□□□□□ -0.51
FOXA3P55318 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms