Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH4P55283 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH4P55283 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH4P55283 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH4P55283 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH4P55283 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH4P55283 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH4P55283 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH4P55283 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH4P55283 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH4P55283 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
CDH4P55283 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH4P55283 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CDH4P55283 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.02■□□□□ 0.16
CDH4P55283 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC16.02■□□□□ 0.16
CDH4P55283 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH4P55283 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.02■□□□□ 0.16
CDH4P55283 AP006294.1-201ENST00000415407 339 ntBASIC16.02■□□□□ 0.16
CDH4P55283 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.02■□□□□ 0.16
CDH4P55283 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.02■□□□□ 0.16
CDH4P55283 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH4P55283 AC005225.4-201ENST00000557330 545 ntBASIC16.02■□□□□ 0.16
CDH4P55283 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH4P55283 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.02■□□□□ 0.16
CDH4P55283 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
CDH4P55283 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.02■□□□□ 0.16
CDH4P55283 AL049840.4-201ENST00000602422 811 ntBASIC16.02■□□□□ 0.16
CDH4P55283 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CDH4P55283 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.02■□□□□ 0.16
CDH4P55283 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.02■□□□□ 0.15
CDH4P55283 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
CDH4P55283 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.02■□□□□ 0.15
CDH4P55283 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.02■□□□□ 0.15
CDH4P55283 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CDH4P55283 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
CDH4P55283 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CDH4P55283 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.02■□□□□ 0.15
CDH4P55283 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
CDH4P55283 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CDH4P55283 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 AC105250.1-201ENST00000509378 2057 ntBASIC16.01■□□□□ 0.15
CDH4P55283 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CDH4P55283 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.01■□□□□ 0.15
CDH4P55283 TNRC18P3-201ENST00000441896 2691 ntBASIC16.01■□□□□ 0.15
CDH4P55283 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
CDH4P55283 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.01■□□□□ 0.15
CDH4P55283 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.01■□□□□ 0.15
CDH4P55283 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.01■□□□□ 0.15
CDH4P55283 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.01■□□□□ 0.15
CDH4P55283 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.01■□□□□ 0.15
CDH4P55283 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.01■□□□□ 0.15
CDH4P55283 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.01■□□□□ 0.15
CDH4P55283 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.01■□□□□ 0.15
CDH4P55283 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.01■□□□□ 0.15
CDH4P55283 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CDH4P55283 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 AC007950.2-201ENST00000615045 2347 ntBASIC16.01■□□□□ 0.15
CDH4P55283 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.01■□□□□ 0.15
CDH4P55283 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.01■□□□□ 0.15
CDH4P55283 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH4P55283 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.01■□□□□ 0.15
CDH4P55283 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH4P55283 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16■□□□□ 0.15
CDH4P55283 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH4P55283 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH4P55283 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16■□□□□ 0.15
CDH4P55283 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH4P55283 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH4P55283 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16■□□□□ 0.15
CDH4P55283 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH4P55283 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH4P55283 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 153.4 ms