Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MRE11P49959 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MRE11P49959 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MRE11P49959 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.47■□□□□ 0.55
MRE11P49959 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
MRE11P49959 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.47■□□□□ 0.55
MRE11P49959 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.47■□□□□ 0.55
MRE11P49959 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
MRE11P49959 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MRE11P49959 BNIP3P18-201ENST00000593976 575 ntBASIC18.47■□□□□ 0.55
MRE11P49959 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
MRE11P49959 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.47■□□□□ 0.55
MRE11P49959 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.47■□□□□ 0.55
MRE11P49959 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MRE11P49959 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MRE11P49959 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC18.47■□□□□ 0.55
MRE11P49959 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MRE11P49959 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
MRE11P49959 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
MRE11P49959 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MRE11P49959 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
MRE11P49959 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
MRE11P49959 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
MRE11P49959 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
MRE11P49959 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
MRE11P49959 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC18.46■□□□□ 0.55
MRE11P49959 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.46■□□□□ 0.55
MRE11P49959 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
MRE11P49959 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.46■□□□□ 0.55
MRE11P49959 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC18.46■□□□□ 0.55
MRE11P49959 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC18.46■□□□□ 0.55
MRE11P49959 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
MRE11P49959 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.46■□□□□ 0.55
MRE11P49959 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
MRE11P49959 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
MRE11P49959 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
MRE11P49959 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.46■□□□□ 0.54
MRE11P49959 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.45■□□□□ 0.54
MRE11P49959 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.45■□□□□ 0.54
MRE11P49959 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MRE11P49959 AC126365.1-201ENST00000578585 1514 ntBASIC18.45■□□□□ 0.54
MRE11P49959 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MRE11P49959 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.45■□□□□ 0.54
MRE11P49959 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
MRE11P49959 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
MRE11P49959 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.45■□□□□ 0.54
MRE11P49959 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.45■□□□□ 0.54
MRE11P49959 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.45■□□□□ 0.54
MRE11P49959 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.45■□□□□ 0.54
MRE11P49959 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.45■□□□□ 0.54
MRE11P49959 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.45■□□□□ 0.54
MRE11P49959 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.45■□□□□ 0.54
MRE11P49959 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.45■□□□□ 0.54
MRE11P49959 AC020765.3-201ENST00000613051 740 ntBASIC18.45■□□□□ 0.54
MRE11P49959 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC18.45■□□□□ 0.54
MRE11P49959 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC18.45■□□□□ 0.54
MRE11P49959 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.45■□□□□ 0.54
MRE11P49959 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC18.45■□□□□ 0.54
MRE11P49959 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MRE11P49959 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms