Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.33■□□□□ 0.2
PTPN9P43378 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.33■□□□□ 0.2
PTPN9P43378 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.33■□□□□ 0.2
PTPN9P43378 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.33■□□□□ 0.2
PTPN9P43378 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.33■□□□□ 0.2
PTPN9P43378 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.33■□□□□ 0.2
PTPN9P43378 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.33■□□□□ 0.2
PTPN9P43378 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.33■□□□□ 0.2
PTPN9P43378 RNA5SP421-201ENST00000516864 134 ntBASIC16.33■□□□□ 0.2
PTPN9P43378 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.33■□□□□ 0.2
PTPN9P43378 AC135586.1-201ENST00000539323 574 ntBASIC16.33■□□□□ 0.2
PTPN9P43378 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.33■□□□□ 0.2
PTPN9P43378 SRD5A3P1-201ENST00000603021 949 ntBASIC16.33■□□□□ 0.2
PTPN9P43378 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
PTPN9P43378 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.33■□□□□ 0.2
PTPN9P43378 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
PTPN9P43378 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
PTPN9P43378 AL121723.1-201ENST00000445194 1519 ntBASIC16.33■□□□□ 0.2
PTPN9P43378 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.33■□□□□ 0.2
PTPN9P43378 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
PTPN9P43378 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.33■□□□□ 0.2
PTPN9P43378 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
PTPN9P43378 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PTPN9P43378 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PTPN9P43378 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
PTPN9P43378 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
PTPN9P43378 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.32■□□□□ 0.2
PTPN9P43378 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.32■□□□□ 0.2
PTPN9P43378 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN9P43378 FAM8A3P-201ENST00000427218 844 ntBASIC16.32■□□□□ 0.2
PTPN9P43378 KRT8P44-201ENST00000441609 1350 ntBASIC16.32■□□□□ 0.2
PTPN9P43378 SPDYE18-201ENST00000510091 1050 ntBASIC16.32■□□□□ 0.2
PTPN9P43378 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN9P43378 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 AL109954.1-202ENST00000564051 2148 ntBASIC16.32■□□□□ 0.2
PTPN9P43378 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN9P43378 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PTPN9P43378 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN9P43378 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.32■□□□□ 0.2
PTPN9P43378 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.32■□□□□ 0.2
PTPN9P43378 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.32■□□□□ 0.2
PTPN9P43378 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN9P43378 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
PTPN9P43378 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.32■□□□□ 0.2
PTPN9P43378 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTPN9P43378 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
PTPN9P43378 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PTPN9P43378 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.31■□□□□ 0.2
PTPN9P43378 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.31■□□□□ 0.2
PTPN9P43378 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PTPN9P43378 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.31■□□□□ 0.2
PTPN9P43378 MIR770-201ENST00000390219 98 ntBASIC16.31■□□□□ 0.2
PTPN9P43378 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.31■□□□□ 0.2
PTPN9P43378 MEIS3P1-201ENST00000495167 958 ntBASIC16.31■□□□□ 0.2
PTPN9P43378 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.31■□□□□ 0.2
PTPN9P43378 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTPN9P43378 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
PTPN9P43378 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms