Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.88□□□□□ -0.03
SOX3P41225 AL080243.2-201ENST00000418783 582 ntBASIC14.88□□□□□ -0.03
SOX3P41225 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.88□□□□□ -0.03
SOX3P41225 AL139010.1-201ENST00000454878 894 ntBASIC14.88□□□□□ -0.03
SOX3P41225 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.88□□□□□ -0.03
SOX3P41225 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.88□□□□□ -0.03
SOX3P41225 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX3P41225 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
SOX3P41225 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX3P41225 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX3P41225 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.88□□□□□ -0.03
SOX3P41225 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX3P41225 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.88□□□□□ -0.03
SOX3P41225 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX3P41225 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.87□□□□□ -0.03
SOX3P41225 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.87□□□□□ -0.03
SOX3P41225 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SOX3P41225 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SOX3P41225 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SOX3P41225 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 TSSK5P-201ENST00000423978 907 ntBASIC14.87□□□□□ -0.03
SOX3P41225 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.87□□□□□ -0.03
SOX3P41225 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.87□□□□□ -0.03
SOX3P41225 UGT1A2P-201ENST00000454886 866 ntBASIC14.87□□□□□ -0.03
SOX3P41225 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 AC004890.2-204ENST00000481968 304 ntBASIC14.87□□□□□ -0.03
SOX3P41225 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SOX3P41225 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SOX3P41225 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
SOX3P41225 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.86□□□□□ -0.03
SOX3P41225 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SOX3P41225 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.86□□□□□ -0.03
SOX3P41225 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
SOX3P41225 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms