Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.9■□□□□ 0.14
PTPN4P29074 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.9■□□□□ 0.14
PTPN4P29074 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.9■□□□□ 0.14
PTPN4P29074 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 AC009093.7-201ENST00000623853 1223 ntBASIC15.9■□□□□ 0.14
PTPN4P29074 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
PTPN4P29074 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.9■□□□□ 0.14
PTPN4P29074 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.9■□□□□ 0.14
PTPN4P29074 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PTPN4P29074 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
PTPN4P29074 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
PTPN4P29074 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN4P29074 AL592424.1-201ENST00000563624 1536 ntBASIC15.89■□□□□ 0.13
PTPN4P29074 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN4P29074 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PTPN4P29074 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 HMGA1P7-201ENST00000406908 502 ntBASIC15.89■□□□□ 0.13
PTPN4P29074 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN4P29074 AL592309.1-201ENST00000443127 649 ntBASIC15.89■□□□□ 0.13
PTPN4P29074 FAM86GP-201ENST00000448322 971 ntBASIC15.89■□□□□ 0.13
PTPN4P29074 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.89■□□□□ 0.13
PTPN4P29074 AC093520.2-201ENST00000561830 333 ntBASIC15.89■□□□□ 0.13
PTPN4P29074 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PTPN4P29074 RARRES2P8-201ENST00000566335 367 ntBASIC15.89■□□□□ 0.13
PTPN4P29074 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.89■□□□□ 0.13
PTPN4P29074 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.89■□□□□ 0.13
PTPN4P29074 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.89■□□□□ 0.13
PTPN4P29074 AL161645.1-201ENST00000622716 1255 ntBASIC15.89■□□□□ 0.13
PTPN4P29074 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PTPN4P29074 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PTPN4P29074 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 AKAP8P1-201ENST00000434743 1349 ntBASIC15.89■□□□□ 0.13
PTPN4P29074 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PTPN4P29074 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PTPN4P29074 AC012569.1-201ENST00000591191 1524 ntBASIC15.89■□□□□ 0.13
PTPN4P29074 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.88■□□□□ 0.13
PTPN4P29074 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.88■□□□□ 0.13
PTPN4P29074 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
PTPN4P29074 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.88■□□□□ 0.13
PTPN4P29074 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
PTPN4P29074 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PTPN4P29074 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms