Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MSH3P20585 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSH3P20585 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSH3P20585 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.71■□□□□ 0.11
MSH3P20585 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.71■□□□□ 0.11
MSH3P20585 TSSK5P-201ENST00000423978 907 ntBASIC15.71■□□□□ 0.11
MSH3P20585 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.71■□□□□ 0.11
MSH3P20585 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.71■□□□□ 0.11
MSH3P20585 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.71■□□□□ 0.11
MSH3P20585 SDHAP3-202ENST00000515467 728 ntBASIC15.71■□□□□ 0.11
MSH3P20585 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.71■□□□□ 0.11
MSH3P20585 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.71■□□□□ 0.11
MSH3P20585 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.71■□□□□ 0.11
MSH3P20585 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.71■□□□□ 0.11
MSH3P20585 AC011467.4-201ENST00000594891 528 ntBASIC15.71■□□□□ 0.11
MSH3P20585 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
MSH3P20585 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MSH3P20585 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSH3P20585 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSH3P20585 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
MSH3P20585 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.71■□□□□ 0.11
MSH3P20585 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.71■□□□□ 0.11
MSH3P20585 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.71■□□□□ 0.11
MSH3P20585 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSH3P20585 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
MSH3P20585 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
MSH3P20585 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
MSH3P20585 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
MSH3P20585 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.71■□□□□ 0.1
MSH3P20585 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
MSH3P20585 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.7■□□□□ 0.1
MSH3P20585 AC022144.1-201ENST00000602255 1580 ntBASIC15.7■□□□□ 0.1
MSH3P20585 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.7■□□□□ 0.1
MSH3P20585 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.7■□□□□ 0.1
MSH3P20585 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
MSH3P20585 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.7■□□□□ 0.1
MSH3P20585 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.7■□□□□ 0.1
MSH3P20585 AC126177.1-201ENST00000547829 2218 ntBASIC15.7■□□□□ 0.1
MSH3P20585 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.7■□□□□ 0.1
MSH3P20585 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.7■□□□□ 0.1
MSH3P20585 AC004890.2-204ENST00000481968 304 ntBASIC15.7■□□□□ 0.1
MSH3P20585 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.7■□□□□ 0.1
MSH3P20585 AC044860.1-202ENST00000559481 777 ntBASIC15.7■□□□□ 0.1
MSH3P20585 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.7■□□□□ 0.1
MSH3P20585 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.7■□□□□ 0.1
MSH3P20585 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.7■□□□□ 0.1
MSH3P20585 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.7■□□□□ 0.1
MSH3P20585 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.7■□□□□ 0.1
MSH3P20585 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSH3P20585 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.69■□□□□ 0.1
MSH3P20585 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.69■□□□□ 0.1
MSH3P20585 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.69■□□□□ 0.1
MSH3P20585 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.69■□□□□ 0.1
MSH3P20585 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.69■□□□□ 0.1
MSH3P20585 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.69■□□□□ 0.1
MSH3P20585 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.69■□□□□ 0.1
MSH3P20585 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.69■□□□□ 0.1
MSH3P20585 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.69■□□□□ 0.1
MSH3P20585 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC15.69■□□□□ 0.1
MSH3P20585 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.69■□□□□ 0.1
MSH3P20585 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.69■□□□□ 0.1
MSH3P20585 HNRNPUP1-201ENST00000554987 333 ntBASIC15.69■□□□□ 0.1
MSH3P20585 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.69■□□□□ 0.1
MSH3P20585 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.69■□□□□ 0.1
MSH3P20585 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 AC025048.3-201ENST00000590609 569 ntBASIC15.69■□□□□ 0.1
MSH3P20585 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 AC005702.4-201ENST00000618393 416 ntBASIC15.69■□□□□ 0.1
MSH3P20585 AL109936.8-201ENST00000641772 604 ntBASIC15.69■□□□□ 0.1
MSH3P20585 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSH3P20585 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
MSH3P20585 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.69■□□□□ 0.1
MSH3P20585 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms