Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC12.27□□□□□ -0.44
CXCL1P09341 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CXCL1P09341 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC12.27□□□□□ -0.44
CXCL1P09341 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
CXCL1P09341 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CXCL1P09341 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
CXCL1P09341 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CXCL1P09341 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
CXCL1P09341 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC12.27□□□□□ -0.44
CXCL1P09341 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
CXCL1P09341 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
CXCL1P09341 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
CXCL1P09341 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC12.27□□□□□ -0.45
CXCL1P09341 AL596275.1-201ENST00000423464 877 ntBASIC12.27□□□□□ -0.45
CXCL1P09341 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
CXCL1P09341 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC12.27□□□□□ -0.45
CXCL1P09341 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.27□□□□□ -0.45
CXCL1P09341 LTBR-211ENST00000543190 785 ntTSL 3 BASIC12.27□□□□□ -0.45
CXCL1P09341 AC091167.2-201ENST00000579581 588 ntBASIC12.27□□□□□ -0.45
CXCL1P09341 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC12.27□□□□□ -0.45
CXCL1P09341 NTF6B-201ENST00000591913 560 ntBASIC12.27□□□□□ -0.45
CXCL1P09341 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
CXCL1P09341 AC114341.1-201ENST00000618070 349 ntBASIC12.27□□□□□ -0.45
CXCL1P09341 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC12.27□□□□□ -0.45
CXCL1P09341 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC12.27□□□□□ -0.45
CXCL1P09341 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC12.27□□□□□ -0.45
CXCL1P09341 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
CXCL1P09341 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC12.27□□□□□ -0.45
CXCL1P09341 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
CXCL1P09341 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC12.27□□□□□ -0.45
CXCL1P09341 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC12.27□□□□□ -0.45
CXCL1P09341 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
CXCL1P09341 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC12.26□□□□□ -0.45
CXCL1P09341 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
CXCL1P09341 AC079776.2-201ENST00000641154 1609 ntBASIC12.26□□□□□ -0.45
CXCL1P09341 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
CXCL1P09341 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC12.26□□□□□ -0.45
CXCL1P09341 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 POM121L3P-201ENST00000419331 1163 ntBASIC12.26□□□□□ -0.45
CXCL1P09341 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC12.26□□□□□ -0.45
CXCL1P09341 BX276092.5-203ENST00000456199 560 ntBASIC12.26□□□□□ -0.45
CXCL1P09341 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
CXCL1P09341 AC091607.1-201ENST00000490318 1060 ntBASIC12.26□□□□□ -0.45
CXCL1P09341 AC022616.7-201ENST00000525383 220 ntBASIC12.26□□□□□ -0.45
CXCL1P09341 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC12.26□□□□□ -0.45
CXCL1P09341 AP005901.3-202ENST00000581653 237 ntBASIC12.26□□□□□ -0.45
CXCL1P09341 MPDU1-223ENST00000582151 728 ntBASIC12.26□□□□□ -0.45
CXCL1P09341 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
CXCL1P09341 AC133561.5-201ENST00000635547 218 ntBASIC12.26□□□□□ -0.45
CXCL1P09341 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC12.26□□□□□ -0.45
CXCL1P09341 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
CXCL1P09341 AC152010.1-201ENST00000415779 2006 ntBASIC12.26□□□□□ -0.45
CXCL1P09341 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms