Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SPTA1P02549 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.21□□□□□ -0.13
SPTA1P02549 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
SPTA1P02549 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
SPTA1P02549 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SPTA1P02549 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.21□□□□□ -0.14
SPTA1P02549 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
SPTA1P02549 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SPTA1P02549 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
SPTA1P02549 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
SPTA1P02549 RPL13AP19-201ENST00000434320 584 ntBASIC14.21□□□□□ -0.14
SPTA1P02549 KRT18P25-201ENST00000508931 1278 ntBASIC14.21□□□□□ -0.14
SPTA1P02549 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.14
SPTA1P02549 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC14.21□□□□□ -0.14
SPTA1P02549 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC14.21□□□□□ -0.14
SPTA1P02549 AC007663.3-201ENST00000609632 465 ntBASIC14.21□□□□□ -0.14
SPTA1P02549 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SPTA1P02549 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
SPTA1P02549 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SPTA1P02549 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SPTA1P02549 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.2□□□□□ -0.14
SPTA1P02549 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SPTA1P02549 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.2□□□□□ -0.14
SPTA1P02549 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SPTA1P02549 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 KRT8P35-201ENST00000483942 1338 ntBASIC14.2□□□□□ -0.14
SPTA1P02549 AC006480.2-201ENST00000609770 1337 ntBASIC14.2□□□□□ -0.14
SPTA1P02549 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC14.2□□□□□ -0.14
SPTA1P02549 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC14.2□□□□□ -0.14
SPTA1P02549 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.2□□□□□ -0.14
SPTA1P02549 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC14.2□□□□□ -0.14
SPTA1P02549 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SPTA1P02549 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.2□□□□□ -0.14
SPTA1P02549 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
SPTA1P02549 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SPTA1P02549 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.2□□□□□ -0.14
SPTA1P02549 AL023775.1-201ENST00000454907 1746 ntBASIC14.2□□□□□ -0.14
SPTA1P02549 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.2□□□□□ -0.14
SPTA1P02549 AL590640.2-201ENST00000457038 527 ntBASIC14.2□□□□□ -0.14
SPTA1P02549 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
SPTA1P02549 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC14.2□□□□□ -0.14
SPTA1P02549 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.2□□□□□ -0.14
SPTA1P02549 AP001505.2-201ENST00000616815 443 ntBASIC14.2□□□□□ -0.14
SPTA1P02549 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.2□□□□□ -0.14
SPTA1P02549 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
SPTA1P02549 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.2□□□□□ -0.14
SPTA1P02549 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
SPTA1P02549 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
SPTA1P02549 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.19□□□□□ -0.14
SPTA1P02549 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC14.19□□□□□ -0.14
SPTA1P02549 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
SPTA1P02549 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.19□□□□□ -0.14
SPTA1P02549 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 CYP46A4P-201ENST00000414953 267 ntBASIC14.19□□□□□ -0.14
SPTA1P02549 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.19□□□□□ -0.14
SPTA1P02549 AP002490.2-201ENST00000524791 560 ntBASIC14.19□□□□□ -0.14
SPTA1P02549 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.19□□□□□ -0.14
SPTA1P02549 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
SPTA1P02549 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 AC018695.7-201ENST00000624587 2492 ntBASIC14.19□□□□□ -0.14
SPTA1P02549 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
SPTA1P02549 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
SPTA1P02549 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms