Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.7■□□□□ 0.58
MBD4O95243 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.7■□□□□ 0.58
MBD4O95243 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MBD4O95243 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.7■□□□□ 0.58
MBD4O95243 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MBD4O95243 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.7■□□□□ 0.58
MBD4O95243 AC124283.3-201ENST00000570869 594 ntBASIC18.7■□□□□ 0.58
MBD4O95243 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.7■□□□□ 0.58
MBD4O95243 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.7■□□□□ 0.58
MBD4O95243 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.7■□□□□ 0.58
MBD4O95243 AL033527.5-201ENST00000641382 801 ntBASIC18.7■□□□□ 0.58
MBD4O95243 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
MBD4O95243 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.7■□□□□ 0.58
MBD4O95243 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.7■□□□□ 0.58
MBD4O95243 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MBD4O95243 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
MBD4O95243 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.7■□□□□ 0.58
MBD4O95243 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC18.7■□□□□ 0.58
MBD4O95243 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
MBD4O95243 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
MBD4O95243 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MBD4O95243 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MBD4O95243 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.7■□□□□ 0.58
MBD4O95243 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
MBD4O95243 AC022188.1-201ENST00000620960 1664 ntBASIC18.69■□□□□ 0.58
MBD4O95243 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.69■□□□□ 0.58
MBD4O95243 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
MBD4O95243 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.69■□□□□ 0.58
MBD4O95243 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.69■□□□□ 0.58
MBD4O95243 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.69■□□□□ 0.58
MBD4O95243 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.69■□□□□ 0.58
MBD4O95243 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18.69■□□□□ 0.58
MBD4O95243 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
MBD4O95243 AC134915.1-201ENST00000426461 574 ntBASIC18.69■□□□□ 0.58
MBD4O95243 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.69■□□□□ 0.58
MBD4O95243 AC011495.1-201ENST00000498085 584 ntBASIC18.69■□□□□ 0.58
MBD4O95243 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.69■□□□□ 0.58
MBD4O95243 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 AC120045.2-201ENST00000567334 178 ntBASIC18.69■□□□□ 0.58
MBD4O95243 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.69■□□□□ 0.58
MBD4O95243 RPSAP52-203ENST00000622976 1023 ntBASIC18.69■□□□□ 0.58
MBD4O95243 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
MBD4O95243 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 AC007950.2-201ENST00000615045 2347 ntBASIC18.69■□□□□ 0.58
MBD4O95243 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.69■□□□□ 0.58
MBD4O95243 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 PAUPAR-201ENST00000630360 2965 ntBASIC18.69■□□□□ 0.58
MBD4O95243 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD4O95243 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.69■□□□□ 0.58
MBD4O95243 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
MBD4O95243 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.68■□□□□ 0.58
MBD4O95243 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.68■□□□□ 0.58
MBD4O95243 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
MBD4O95243 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.68■□□□□ 0.58
MBD4O95243 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.68■□□□□ 0.58
MBD4O95243 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.68■□□□□ 0.58
MBD4O95243 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.68■□□□□ 0.58
MBD4O95243 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.68■□□□□ 0.58
MBD4O95243 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.68■□□□□ 0.58
MBD4O95243 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.68■□□□□ 0.58
MBD4O95243 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.68■□□□□ 0.58
MBD4O95243 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.68■□□□□ 0.58
MBD4O95243 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.68■□□□□ 0.58
MBD4O95243 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.68■□□□□ 0.58
MBD4O95243 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
MBD4O95243 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.68■□□□□ 0.58
MBD4O95243 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.68■□□□□ 0.58
MBD4O95243 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.68■□□□□ 0.58
MBD4O95243 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
MBD4O95243 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD4O95243 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms