Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.61■■□□□ 1.69
TRAIPQ9BWF2 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TRAIPQ9BWF2 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.61■■□□□ 1.69
TRAIPQ9BWF2 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TRAIPQ9BWF2 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
TRAIPQ9BWF2 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.6■■□□□ 1.69
TRAIPQ9BWF2 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
TRAIPQ9BWF2 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
TRAIPQ9BWF2 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC25.6■■□□□ 1.69
TRAIPQ9BWF2 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC25.6■■□□□ 1.69
TRAIPQ9BWF2 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 AC090877.2-201ENST00000558441 1738 ntBASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TRAIPQ9BWF2 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
TRAIPQ9BWF2 AC008406.3-201ENST00000620001 1374 ntBASIC25.58■■□□□ 1.69
TRAIPQ9BWF2 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
TRAIPQ9BWF2 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.58■■□□□ 1.69
TRAIPQ9BWF2 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
TRAIPQ9BWF2 MTURN-203ENST00000409688 843 ntTSL 2 BASIC25.58■■□□□ 1.69
TRAIPQ9BWF2 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.58■■□□□ 1.69
TRAIPQ9BWF2 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.58■■□□□ 1.69
TRAIPQ9BWF2 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.68
TRAIPQ9BWF2 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TRAIPQ9BWF2 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TRAIPQ9BWF2 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC25.57■■□□□ 1.68
TRAIPQ9BWF2 AC010997.5-201ENST00000609182 354 ntBASIC25.57■■□□□ 1.68
TRAIPQ9BWF2 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25.57■■□□□ 1.68
TRAIPQ9BWF2 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC25.56■■□□□ 1.68
TRAIPQ9BWF2 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC25.56■■□□□ 1.68
TRAIPQ9BWF2 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
TRAIPQ9BWF2 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC25.56■■□□□ 1.68
TRAIPQ9BWF2 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
TRAIPQ9BWF2 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.55■■□□□ 1.68
TRAIPQ9BWF2 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
TRAIPQ9BWF2 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.55■■□□□ 1.68
TRAIPQ9BWF2 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TRAIPQ9BWF2 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC25.55■■□□□ 1.68
TRAIPQ9BWF2 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TRAIPQ9BWF2 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 MIR6724-1-201ENST00000616420 92 ntBASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 MIR6724-2-201ENST00000616483 92 ntBASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 MIR6724-4-201ENST00000617390 92 ntBASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 MIR6724-3-201ENST00000622482 92 ntBASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
TRAIPQ9BWF2 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TRAIPQ9BWF2 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TRAIPQ9BWF2 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
TRAIPQ9BWF2 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.53■■□□□ 1.68
TRAIPQ9BWF2 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.53■■□□□ 1.68
TRAIPQ9BWF2 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
TRAIPQ9BWF2 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TRAIPQ9BWF2 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC25.53■■□□□ 1.68
TRAIPQ9BWF2 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
TRAIPQ9BWF2 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.52■■□□□ 1.68
TRAIPQ9BWF2 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
TRAIPQ9BWF2 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.52■■□□□ 1.68
TRAIPQ9BWF2 MIR3621-201ENST00000580529 85 ntBASIC25.52■■□□□ 1.68
TRAIPQ9BWF2 MTDHP2-201ENST00000601468 714 ntBASIC25.52■■□□□ 1.68
TRAIPQ9BWF2 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
TRAIPQ9BWF2 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
TRAIPQ9BWF2 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
TRAIPQ9BWF2 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
TRAIPQ9BWF2 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
TRAIPQ9BWF2 AC092803.2-201ENST00000564287 1899 ntBASIC25.51■■□□□ 1.67
TRAIPQ9BWF2 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
TRAIPQ9BWF2 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
TRAIPQ9BWF2 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
TRAIPQ9BWF2 DUSP8P4-201ENST00000399538 1761 ntBASIC25.5■■□□□ 1.67
TRAIPQ9BWF2 AC020928.2-201ENST00000588717 2197 ntBASIC25.5■■□□□ 1.67
TRAIPQ9BWF2 AL117332.1-201ENST00000622628 974 ntBASIC25.5■■□□□ 1.67
TRAIPQ9BWF2 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 CLTA-210ENST00000540080 989 ntTSL 2 BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
TRAIPQ9BWF2 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
TRAIPQ9BWF2 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
TRAIPQ9BWF2 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms