Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 MIR4767-201ENST00000582827 78 ntBASIC31.75■■■□□ 2.67
ABCA3Q99758 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
ABCA3Q99758 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
ABCA3Q99758 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC31.74■■■□□ 2.67
ABCA3Q99758 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
ABCA3Q99758 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC31.74■■■□□ 2.67
ABCA3Q99758 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
ABCA3Q99758 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC31.73■■■□□ 2.67
ABCA3Q99758 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
ABCA3Q99758 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC31.72■■■□□ 2.67
ABCA3Q99758 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC31.72■■■□□ 2.67
ABCA3Q99758 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC31.72■■■□□ 2.67
ABCA3Q99758 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC31.72■■■□□ 2.67
ABCA3Q99758 PTCHD3P2-201ENST00000424937 1205 ntBASIC31.72■■■□□ 2.67
ABCA3Q99758 PARL-206ENST00000435888 1098 ntTSL 5 BASIC31.72■■■□□ 2.67
ABCA3Q99758 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
ABCA3Q99758 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC31.71■■■□□ 2.67
ABCA3Q99758 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC31.71■■■□□ 2.67
ABCA3Q99758 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
ABCA3Q99758 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
ABCA3Q99758 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC31.71■■■□□ 2.67
ABCA3Q99758 LBH-205ENST00000407930 756 ntTSL 2 BASIC31.7■■■□□ 2.67
ABCA3Q99758 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC31.7■■■□□ 2.67
ABCA3Q99758 CA15P2-201ENST00000611168 834 ntBASIC31.7■■■□□ 2.67
ABCA3Q99758 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
ABCA3Q99758 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
ABCA3Q99758 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
ABCA3Q99758 AC027682.1-201ENST00000562846 899 ntBASIC31.69■■■□□ 2.66
ABCA3Q99758 MAG-206ENST00000597035 542 ntTSL 4 BASIC31.69■■■□□ 2.66
ABCA3Q99758 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC31.69■■■□□ 2.66
ABCA3Q99758 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
ABCA3Q99758 RBM38-205ENST00000440234 686 ntTSL 2 BASIC31.68■■■□□ 2.66
ABCA3Q99758 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC31.68■■■□□ 2.66
ABCA3Q99758 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
ABCA3Q99758 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
ABCA3Q99758 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
ABCA3Q99758 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
ABCA3Q99758 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
ABCA3Q99758 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC31.67■■■□□ 2.66
ABCA3Q99758 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
ABCA3Q99758 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
ABCA3Q99758 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC31.67■■■□□ 2.66
ABCA3Q99758 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
ABCA3Q99758 AC090877.2-201ENST00000558441 1738 ntBASIC31.67■■■□□ 2.66
ABCA3Q99758 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
ABCA3Q99758 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
ABCA3Q99758 AC090192.1-201ENST00000517740 490 ntBASIC31.66■■■□□ 2.66
ABCA3Q99758 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
ABCA3Q99758 DUX4L19-201ENST00000557448 1267 ntBASIC31.66■■■□□ 2.66
ABCA3Q99758 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC31.66■■■□□ 2.66
ABCA3Q99758 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.66■■■□□ 2.66
ABCA3Q99758 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC31.66■■■□□ 2.66
ABCA3Q99758 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
ABCA3Q99758 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
ABCA3Q99758 RASA4CP-201ENST00000424092 1398 ntBASIC31.64■■■□□ 2.66
ABCA3Q99758 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC31.64■■■□□ 2.66
ABCA3Q99758 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
ABCA3Q99758 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC31.63■■■□□ 2.65
ABCA3Q99758 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
ABCA3Q99758 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
ABCA3Q99758 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
ABCA3Q99758 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
ABCA3Q99758 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC31.63■■■□□ 2.65
ABCA3Q99758 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
ABCA3Q99758 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
ABCA3Q99758 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC31.62■■■□□ 2.65
ABCA3Q99758 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
ABCA3Q99758 HACD1-201ENST00000326961 773 ntTSL 2 BASIC31.61■■■□□ 2.65
ABCA3Q99758 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
ABCA3Q99758 SERBP1P1-201ENST00000396021 1160 ntBASIC31.61■■■□□ 2.65
ABCA3Q99758 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC31.61■■■□□ 2.65
ABCA3Q99758 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC31.61■■■□□ 2.65
ABCA3Q99758 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC31.61■■■□□ 2.65
ABCA3Q99758 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
ABCA3Q99758 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC31.6■■■□□ 2.65
ABCA3Q99758 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
ABCA3Q99758 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
ABCA3Q99758 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC31.6■■■□□ 2.65
ABCA3Q99758 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC31.6■■■□□ 2.65
ABCA3Q99758 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC31.6■■■□□ 2.65
ABCA3Q99758 AC011298.3-201ENST00000615796 283 ntBASIC31.6■■■□□ 2.65
ABCA3Q99758 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
ABCA3Q99758 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
ABCA3Q99758 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
ABCA3Q99758 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC31.58■■■□□ 2.65
ABCA3Q99758 IKBKGP1-201ENST00000612193 1073 ntBASIC31.58■■■□□ 2.65
ABCA3Q99758 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
ABCA3Q99758 RHOF-204ENST00000537265 699 ntTSL 2 BASIC31.58■■■□□ 2.65
ABCA3Q99758 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC31.58■■■□□ 2.65
ABCA3Q99758 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC31.58■■■□□ 2.65
ABCA3Q99758 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
ABCA3Q99758 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC31.57■■■□□ 2.65
ABCA3Q99758 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC31.57■■■□□ 2.65
ABCA3Q99758 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC31.57■■■□□ 2.64
ABCA3Q99758 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
ABCA3Q99758 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
ABCA3Q99758 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
ABCA3Q99758 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
ABCA3Q99758 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
ABCA3Q99758 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms