Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL12A1Q99715 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL12A1Q99715 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
COL12A1Q99715 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.78■□□□□ 0.92
COL12A1Q99715 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.78■□□□□ 0.92
COL12A1Q99715 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL12A1Q99715 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL12A1Q99715 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL12A1Q99715 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.77■□□□□ 0.92
COL12A1Q99715 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.77■□□□□ 0.92
COL12A1Q99715 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL12A1Q99715 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL12A1Q99715 SNX5-217ENST00000606557 1087 ntBASIC20.76■□□□□ 0.91
COL12A1Q99715 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
COL12A1Q99715 SYT6-210ENST00000641643 1587 ntBASIC20.76■□□□□ 0.91
COL12A1Q99715 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.76■□□□□ 0.91
COL12A1Q99715 YBX1P1-201ENST00000445822 960 ntBASIC20.75■□□□□ 0.91
COL12A1Q99715 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.75■□□□□ 0.91
COL12A1Q99715 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL12A1Q99715 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
COL12A1Q99715 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
COL12A1Q99715 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL12A1Q99715 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.75■□□□□ 0.91
COL12A1Q99715 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL12A1Q99715 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.74■□□□□ 0.91
COL12A1Q99715 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL12A1Q99715 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
COL12A1Q99715 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL12A1Q99715 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL12A1Q99715 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL12A1Q99715 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL12A1Q99715 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL12A1Q99715 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.73■□□□□ 0.91
COL12A1Q99715 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL12A1Q99715 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.73■□□□□ 0.91
COL12A1Q99715 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL12A1Q99715 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL12A1Q99715 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.72■□□□□ 0.91
COL12A1Q99715 DUX4L19-201ENST00000557448 1267 ntBASIC20.72■□□□□ 0.91
COL12A1Q99715 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL12A1Q99715 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
COL12A1Q99715 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
COL12A1Q99715 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.72■□□□□ 0.91
COL12A1Q99715 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.72■□□□□ 0.91
COL12A1Q99715 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL12A1Q99715 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL12A1Q99715 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL12A1Q99715 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.71■□□□□ 0.91
COL12A1Q99715 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL12A1Q99715 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
COL12A1Q99715 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.71■□□□□ 0.91
COL12A1Q99715 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.71■□□□□ 0.91
COL12A1Q99715 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL12A1Q99715 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL12A1Q99715 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.71■□□□□ 0.91
COL12A1Q99715 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.7■□□□□ 0.9
COL12A1Q99715 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.7■□□□□ 0.9
COL12A1Q99715 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.7■□□□□ 0.9
COL12A1Q99715 DUX4L2-201ENST00000561772 1275 ntBASIC20.7■□□□□ 0.9
COL12A1Q99715 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.7■□□□□ 0.9
COL12A1Q99715 DUX4L6-201ENST00000626483 1275 ntBASIC20.7■□□□□ 0.9
COL12A1Q99715 DUX4L1-201ENST00000627662 1275 ntBASIC20.7■□□□□ 0.9
COL12A1Q99715 DUX4L8-201ENST00000629013 1275 ntBASIC20.7■□□□□ 0.9
COL12A1Q99715 DUX4L3-201ENST00000630187 1275 ntBASIC20.7■□□□□ 0.9
COL12A1Q99715 DUX4L7-201ENST00000630678 1275 ntBASIC20.7■□□□□ 0.9
COL12A1Q99715 DUX4L5-201ENST00000630834 1275 ntBASIC20.7■□□□□ 0.9
COL12A1Q99715 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL12A1Q99715 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL12A1Q99715 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
COL12A1Q99715 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL12A1Q99715 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL12A1Q99715 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.69■□□□□ 0.9
COL12A1Q99715 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL12A1Q99715 AC008764.7-201ENST00000593779 1081 ntBASIC20.69■□□□□ 0.9
COL12A1Q99715 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.69■□□□□ 0.9
COL12A1Q99715 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL12A1Q99715 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL12A1Q99715 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC20.69■□□□□ 0.9
COL12A1Q99715 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.69■□□□□ 0.9
COL12A1Q99715 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL12A1Q99715 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
COL12A1Q99715 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL12A1Q99715 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL12A1Q99715 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
COL12A1Q99715 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL12A1Q99715 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.69■□□□□ 0.9
COL12A1Q99715 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.69■□□□□ 0.9
COL12A1Q99715 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL12A1Q99715 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL12A1Q99715 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.68■□□□□ 0.9
COL12A1Q99715 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.68■□□□□ 0.9
COL12A1Q99715 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.67■□□□□ 0.9
COL12A1Q99715 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL12A1Q99715 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL12A1Q99715 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.67■□□□□ 0.9
COL12A1Q99715 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL12A1Q99715 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL12A1Q99715 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
COL12A1Q99715 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL12A1Q99715 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms