Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
LINC00643Q86TS7 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
LINC00643Q86TS7 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00643Q86TS7 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00643Q86TS7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00643Q86TS7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00643Q86TS7 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC14.72□□□□□ -0.05
LINC00643Q86TS7 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00643Q86TS7 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00643Q86TS7 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00643Q86TS7 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
LINC00643Q86TS7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
LINC00643Q86TS7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC14.71□□□□□ -0.06
LINC00643Q86TS7 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
LINC00643Q86TS7 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC14.7□□□□□ -0.06
LINC00643Q86TS7 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 AC073130.3-201ENST00000624389 2278 ntBASIC14.69□□□□□ -0.06
LINC00643Q86TS7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC14.69□□□□□ -0.06
LINC00643Q86TS7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00643Q86TS7 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00643Q86TS7 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00643Q86TS7 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00643Q86TS7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00643Q86TS7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00643Q86TS7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC14.67□□□□□ -0.06
LINC00643Q86TS7 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00643Q86TS7 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
LINC00643Q86TS7 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
LINC00643Q86TS7 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00643Q86TS7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC14.66□□□□□ -0.06
LINC00643Q86TS7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms