Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COL28A1Q2UY09 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL28A1Q2UY09 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.4■■□□□ 1.18
COL28A1Q2UY09 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.4■■□□□ 1.18
COL28A1Q2UY09 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
COL28A1Q2UY09 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
COL28A1Q2UY09 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
COL28A1Q2UY09 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
COL28A1Q2UY09 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.39■■□□□ 1.18
COL28A1Q2UY09 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL28A1Q2UY09 EDA-201ENST00000338901 1233 ntBASIC22.39■■□□□ 1.17
COL28A1Q2UY09 SENP5-202ENST00000419026 973 ntTSL 3 BASIC22.39■■□□□ 1.17
COL28A1Q2UY09 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.39■■□□□ 1.17
COL28A1Q2UY09 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC22.39■■□□□ 1.17
COL28A1Q2UY09 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
COL28A1Q2UY09 RARRES2P11-201ENST00000635158 484 ntBASIC22.39■■□□□ 1.17
COL28A1Q2UY09 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.39■■□□□ 1.17
COL28A1Q2UY09 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL28A1Q2UY09 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
COL28A1Q2UY09 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.38■■□□□ 1.17
COL28A1Q2UY09 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL28A1Q2UY09 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
COL28A1Q2UY09 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.38■■□□□ 1.17
COL28A1Q2UY09 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC22.38■■□□□ 1.17
COL28A1Q2UY09 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
COL28A1Q2UY09 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.38■■□□□ 1.17
COL28A1Q2UY09 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
COL28A1Q2UY09 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
COL28A1Q2UY09 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
COL28A1Q2UY09 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
COL28A1Q2UY09 PLD4-205ENST00000553861 667 ntTSL 2 BASIC22.37■■□□□ 1.17
COL28A1Q2UY09 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.37■■□□□ 1.17
COL28A1Q2UY09 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
COL28A1Q2UY09 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
COL28A1Q2UY09 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
COL28A1Q2UY09 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL28A1Q2UY09 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.36■■□□□ 1.17
COL28A1Q2UY09 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL28A1Q2UY09 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL28A1Q2UY09 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
COL28A1Q2UY09 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC22.36■■□□□ 1.17
COL28A1Q2UY09 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.36■■□□□ 1.17
COL28A1Q2UY09 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC22.36■■□□□ 1.17
COL28A1Q2UY09 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL28A1Q2UY09 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL28A1Q2UY09 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
COL28A1Q2UY09 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL28A1Q2UY09 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
COL28A1Q2UY09 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC22.35■■□□□ 1.17
COL28A1Q2UY09 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
COL28A1Q2UY09 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.35■■□□□ 1.17
COL28A1Q2UY09 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL28A1Q2UY09 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.34■■□□□ 1.17
COL28A1Q2UY09 RBM38-205ENST00000440234 686 ntTSL 2 BASIC22.34■■□□□ 1.17
COL28A1Q2UY09 AC024257.2-201ENST00000549699 147 ntBASIC22.34■■□□□ 1.17
COL28A1Q2UY09 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL28A1Q2UY09 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL28A1Q2UY09 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.34■■□□□ 1.17
COL28A1Q2UY09 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.33■■□□□ 1.17
COL28A1Q2UY09 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
COL28A1Q2UY09 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL28A1Q2UY09 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL28A1Q2UY09 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL28A1Q2UY09 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
COL28A1Q2UY09 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.32■■□□□ 1.16
COL28A1Q2UY09 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL28A1Q2UY09 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
COL28A1Q2UY09 STOX2-205ENST00000513034 807 ntTSL 3 BASIC22.32■■□□□ 1.16
COL28A1Q2UY09 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC22.32■■□□□ 1.16
COL28A1Q2UY09 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC22.32■■□□□ 1.16
COL28A1Q2UY09 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL28A1Q2UY09 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL28A1Q2UY09 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL28A1Q2UY09 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.31■■□□□ 1.16
COL28A1Q2UY09 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.31■■□□□ 1.16
COL28A1Q2UY09 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.31■■□□□ 1.16
COL28A1Q2UY09 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
COL28A1Q2UY09 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
COL28A1Q2UY09 AL136967.2-201ENST00000623968 743 ntBASIC22.31■■□□□ 1.16
COL28A1Q2UY09 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.31■■□□□ 1.16
COL28A1Q2UY09 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL28A1Q2UY09 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL28A1Q2UY09 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL28A1Q2UY09 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 AF213884.3-201ENST00000563833 479 ntBASIC22.3■■□□□ 1.16
COL28A1Q2UY09 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL28A1Q2UY09 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms