Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
MSH6P52701 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC32.87■■■□□ 2.85
MSH6P52701 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
MSH6P52701 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC32.87■■■□□ 2.85
MSH6P52701 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
MSH6P52701 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC32.87■■■□□ 2.85
MSH6P52701 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
MSH6P52701 IRS3P-201ENST00000223076 1006 ntBASIC32.86■■■□□ 2.85
MSH6P52701 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
MSH6P52701 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC32.86■■■□□ 2.85
MSH6P52701 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
MSH6P52701 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC32.85■■■□□ 2.85
MSH6P52701 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
MSH6P52701 IKBKGP1-201ENST00000612193 1073 ntBASIC32.85■■■□□ 2.85
MSH6P52701 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC32.85■■■□□ 2.85
MSH6P52701 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
MSH6P52701 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC32.84■■■□□ 2.85
MSH6P52701 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC32.84■■■□□ 2.85
MSH6P52701 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC32.84■■■□□ 2.85
MSH6P52701 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC32.84■■■□□ 2.85
MSH6P52701 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
MSH6P52701 JTB-203ENST00000368589 1216 ntTSL 2 BASIC32.83■■■□□ 2.85
MSH6P52701 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC32.83■■■□□ 2.85
MSH6P52701 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
MSH6P52701 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
MSH6P52701 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC32.83■■■□□ 2.85
MSH6P52701 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC32.83■■■□□ 2.85
MSH6P52701 AC092171.4-201ENST00000609130 632 ntBASIC32.83■■■□□ 2.85
MSH6P52701 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
MSH6P52701 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
MSH6P52701 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC32.82■■■□□ 2.84
MSH6P52701 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
MSH6P52701 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
MSH6P52701 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC32.81■■■□□ 2.84
MSH6P52701 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC32.81■■■□□ 2.84
MSH6P52701 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
MSH6P52701 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC32.81■■■□□ 2.84
MSH6P52701 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC32.81■■■□□ 2.84
MSH6P52701 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC32.81■■■□□ 2.84
MSH6P52701 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
MSH6P52701 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
MSH6P52701 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC32.8■■■□□ 2.84
MSH6P52701 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
MSH6P52701 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
MSH6P52701 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
MSH6P52701 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC32.8■■■□□ 2.84
MSH6P52701 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC32.8■■■□□ 2.84
MSH6P52701 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC32.8■■■□□ 2.84
MSH6P52701 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
MSH6P52701 DRD5P2-201ENST00000421395 2012 ntBASIC32.79■■■□□ 2.84
MSH6P52701 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC32.79■■■□□ 2.84
MSH6P52701 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC32.79■■■□□ 2.84
MSH6P52701 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC32.79■■■□□ 2.84
MSH6P52701 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
MSH6P52701 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
MSH6P52701 RHOF-204ENST00000537265 699 ntTSL 2 BASIC32.79■■■□□ 2.84
MSH6P52701 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC32.79■■■□□ 2.84
MSH6P52701 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
MSH6P52701 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
MSH6P52701 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC32.78■■■□□ 2.84
MSH6P52701 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC32.78■■■□□ 2.84
MSH6P52701 ASB1-202ENST00000409297 878 ntTSL 5 BASIC32.78■■■□□ 2.84
MSH6P52701 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC32.78■■■□□ 2.84
MSH6P52701 FOXO3B-201ENST00000395675 1928 ntBASIC32.78■■■□□ 2.84
MSH6P52701 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC32.78■■■□□ 2.84
MSH6P52701 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
MSH6P52701 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC32.78■■■□□ 2.84
MSH6P52701 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
MSH6P52701 SERBP1P1-201ENST00000396021 1160 ntBASIC32.77■■■□□ 2.84
MSH6P52701 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
MSH6P52701 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC32.77■■■□□ 2.84
MSH6P52701 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC32.77■■■□□ 2.84
MSH6P52701 AC139426.1-201ENST00000568218 2529 ntBASIC32.77■■■□□ 2.84
MSH6P52701 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
MSH6P52701 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC32.76■■■□□ 2.84
MSH6P52701 AL137784.2-201ENST00000607332 1000 ntBASIC32.76■■■□□ 2.83
MSH6P52701 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC32.75■■■□□ 2.83
MSH6P52701 AC022517.1-201ENST00000592429 346 ntBASIC32.75■■■□□ 2.83
MSH6P52701 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
MSH6P52701 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC32.74■■■□□ 2.83
MSH6P52701 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC32.74■■■□□ 2.83
MSH6P52701 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
MSH6P52701 LBH-205ENST00000407930 756 ntTSL 2 BASIC32.74■■■□□ 2.83
MSH6P52701 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC32.74■■■□□ 2.83
MSH6P52701 SP2-202ENST00000613139 908 ntTSL 5 BASIC32.74■■■□□ 2.83
MSH6P52701 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC32.74■■■□□ 2.83
MSH6P52701 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
MSH6P52701 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC32.74■■■□□ 2.83
MSH6P52701 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
MSH6P52701 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
MSH6P52701 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
MSH6P52701 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC32.73■■■□□ 2.83
MSH6P52701 AC008764.7-201ENST00000593779 1081 ntBASIC32.73■■■□□ 2.83
MSH6P52701 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC32.73■■■□□ 2.83
MSH6P52701 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC32.73■■■□□ 2.83
MSH6P52701 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC32.73■■■□□ 2.83
MSH6P52701 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC32.72■■■□□ 2.83
MSH6P52701 AC099791.1-201ENST00000416440 715 ntBASIC32.72■■■□□ 2.83
MSH6P52701 AC034268.1-201ENST00000441047 882 ntBASIC32.72■■■□□ 2.83
MSH6P52701 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC32.72■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms