Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC31.42■■■□□ 2.62
HOXC9P31274 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC31.42■■■□□ 2.62
HOXC9P31274 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC31.42■■■□□ 2.62
HOXC9P31274 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
HOXC9P31274 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
HOXC9P31274 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
HOXC9P31274 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
HOXC9P31274 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
HOXC9P31274 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
HOXC9P31274 MIR6722-201ENST00000617286 78 ntBASIC31.41■■■□□ 2.62
HOXC9P31274 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC31.41■■■□□ 2.62
HOXC9P31274 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
HOXC9P31274 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
HOXC9P31274 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
HOXC9P31274 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC31.4■■■□□ 2.62
HOXC9P31274 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
HOXC9P31274 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
HOXC9P31274 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
HOXC9P31274 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
HOXC9P31274 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
HOXC9P31274 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC31.39■■■□□ 2.62
HOXC9P31274 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC31.39■■■□□ 2.62
HOXC9P31274 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
HOXC9P31274 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
HOXC9P31274 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
HOXC9P31274 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
HOXC9P31274 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC31.37■■■□□ 2.61
HOXC9P31274 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
HOXC9P31274 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
HOXC9P31274 LBH-205ENST00000407930 756 ntTSL 2 BASIC31.37■■■□□ 2.61
HOXC9P31274 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC31.37■■■□□ 2.61
HOXC9P31274 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
HOXC9P31274 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC31.37■■■□□ 2.61
HOXC9P31274 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC31.36■■■□□ 2.61
HOXC9P31274 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC31.36■■■□□ 2.61
HOXC9P31274 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
HOXC9P31274 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
HOXC9P31274 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.36■■■□□ 2.61
HOXC9P31274 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
HOXC9P31274 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
HOXC9P31274 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
HOXC9P31274 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC31.35■■■□□ 2.61
HOXC9P31274 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
HOXC9P31274 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
HOXC9P31274 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC31.35■■■□□ 2.61
HOXC9P31274 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
HOXC9P31274 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC31.35■■■□□ 2.61
HOXC9P31274 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
HOXC9P31274 AC005837.3-201ENST00000612163 286 ntBASIC31.34■■■□□ 2.61
HOXC9P31274 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC31.33■■■□□ 2.61
HOXC9P31274 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
HOXC9P31274 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
HOXC9P31274 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
HOXC9P31274 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC31.32■■■□□ 2.6
HOXC9P31274 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC31.32■■■□□ 2.6
HOXC9P31274 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
HOXC9P31274 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC31.31■■■□□ 2.6
HOXC9P31274 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
HOXC9P31274 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
HOXC9P31274 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
HOXC9P31274 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC31.3■■■□□ 2.6
HOXC9P31274 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC31.3■■■□□ 2.6
HOXC9P31274 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
HOXC9P31274 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HOXC9P31274 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
HOXC9P31274 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
HOXC9P31274 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
HOXC9P31274 AC133561.4-201ENST00000566112 224 ntBASIC31.29■■■□□ 2.6
HOXC9P31274 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC31.29■■■□□ 2.6
HOXC9P31274 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC31.29■■■□□ 2.6
HOXC9P31274 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC31.29■■■□□ 2.6
HOXC9P31274 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
HOXC9P31274 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
HOXC9P31274 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC31.28■■■□□ 2.6
HOXC9P31274 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC31.28■■■□□ 2.6
HOXC9P31274 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC31.28■■■□□ 2.6
HOXC9P31274 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.28■■■□□ 2.6
HOXC9P31274 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.27■■■□□ 2.6
HOXC9P31274 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC31.27■■■□□ 2.6
HOXC9P31274 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
HOXC9P31274 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
HOXC9P31274 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC31.27■■■□□ 2.6
HOXC9P31274 AC092803.2-201ENST00000564287 1899 ntBASIC31.26■■■□□ 2.59
HOXC9P31274 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
HOXC9P31274 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC31.25■■■□□ 2.59
HOXC9P31274 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
HOXC9P31274 AL121749.1-202ENST00000609313 2153 ntBASIC31.24■■■□□ 2.59
HOXC9P31274 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HOXC9P31274 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HOXC9P31274 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HOXC9P31274 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC31.24■■■□□ 2.59
HOXC9P31274 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HOXC9P31274 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
HOXC9P31274 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
HOXC9P31274 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
HOXC9P31274 AC004448.1-201ENST00000458332 883 ntBASIC31.23■■■□□ 2.59
HOXC9P31274 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC31.23■■■□□ 2.59
HOXC9P31274 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC31.23■■■□□ 2.59
HOXC9P31274 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
HOXC9P31274 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC31.22■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms