Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL3A1P02461 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL3A1P02461 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
COL3A1P02461 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL3A1P02461 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL3A1P02461 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC31.24■■■□□ 2.59
COL3A1P02461 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL3A1P02461 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL3A1P02461 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC31.24■■■□□ 2.59
COL3A1P02461 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC31.24■■■□□ 2.59
COL3A1P02461 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
COL3A1P02461 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC31.24■■■□□ 2.59
COL3A1P02461 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL3A1P02461 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
COL3A1P02461 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC31.23■■■□□ 2.59
COL3A1P02461 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC31.23■■■□□ 2.59
COL3A1P02461 AL356441.2-201ENST00000443009 864 ntBASIC31.23■■■□□ 2.59
COL3A1P02461 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC31.23■■■□□ 2.59
COL3A1P02461 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC31.22■■■□□ 2.59
COL3A1P02461 KRT125P-201ENST00000546827 989 ntBASIC31.22■■■□□ 2.59
COL3A1P02461 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC31.22■■■□□ 2.59
COL3A1P02461 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
COL3A1P02461 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC31.21■■■□□ 2.59
COL3A1P02461 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL3A1P02461 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL3A1P02461 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL3A1P02461 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC31.21■■■□□ 2.59
COL3A1P02461 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
COL3A1P02461 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC31.2■■■□□ 2.59
COL3A1P02461 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC31.2■■■□□ 2.58
COL3A1P02461 SNX5-217ENST00000606557 1087 ntBASIC31.2■■■□□ 2.58
COL3A1P02461 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC31.19■■■□□ 2.58
COL3A1P02461 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
COL3A1P02461 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC31.19■■■□□ 2.58
COL3A1P02461 AC092028.1-203ENST00000608262 953 ntBASIC31.19■■■□□ 2.58
COL3A1P02461 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL3A1P02461 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC31.18■■■□□ 2.58
COL3A1P02461 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL3A1P02461 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC31.18■■■□□ 2.58
COL3A1P02461 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL3A1P02461 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.18■■■□□ 2.58
COL3A1P02461 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL3A1P02461 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC31.18■■■□□ 2.58
COL3A1P02461 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC31.17■■■□□ 2.58
COL3A1P02461 LSR-205ENST00000427250 1606 ntTSL 2 BASIC31.17■■■□□ 2.58
COL3A1P02461 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC31.17■■■□□ 2.58
COL3A1P02461 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
COL3A1P02461 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
COL3A1P02461 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
COL3A1P02461 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL3A1P02461 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL3A1P02461 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC31.16■■■□□ 2.58
COL3A1P02461 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
COL3A1P02461 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
COL3A1P02461 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC31.16■■■□□ 2.58
COL3A1P02461 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC31.16■■■□□ 2.58
COL3A1P02461 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL3A1P02461 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
COL3A1P02461 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC31.15■■■□□ 2.58
COL3A1P02461 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL3A1P02461 TK2-202ENST00000417693 1046 ntTSL 2 BASIC31.14■■■□□ 2.58
COL3A1P02461 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC31.14■■■□□ 2.58
COL3A1P02461 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC31.14■■■□□ 2.58
COL3A1P02461 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC31.14■■■□□ 2.58
COL3A1P02461 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC31.14■■■□□ 2.58
COL3A1P02461 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC31.14■■■□□ 2.58
COL3A1P02461 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC31.14■■■□□ 2.58
COL3A1P02461 AC131274.2-201ENST00000580697 1507 ntBASIC31.14■■■□□ 2.58
COL3A1P02461 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC31.14■■■□□ 2.58
COL3A1P02461 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
COL3A1P02461 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
COL3A1P02461 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC31.14■■■□□ 2.57
COL3A1P02461 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL3A1P02461 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL3A1P02461 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL3A1P02461 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL3A1P02461 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL3A1P02461 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC31.13■■■□□ 2.57
COL3A1P02461 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC31.13■■■□□ 2.57
COL3A1P02461 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL3A1P02461 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL3A1P02461 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL3A1P02461 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC31.12■■■□□ 2.57
COL3A1P02461 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
COL3A1P02461 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC31.12■■■□□ 2.57
COL3A1P02461 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
COL3A1P02461 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
COL3A1P02461 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC31.11■■■□□ 2.57
COL3A1P02461 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL3A1P02461 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
COL3A1P02461 GRAMD4P7-201ENST00000578182 1232 ntBASIC31.11■■■□□ 2.57
COL3A1P02461 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC31.11■■■□□ 2.57
COL3A1P02461 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL3A1P02461 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC31.11■■■□□ 2.57
COL3A1P02461 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC31.1■■■□□ 2.57
COL3A1P02461 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
COL3A1P02461 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
COL3A1P02461 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL3A1P02461 KRT16P3-201ENST00000439127 1283 ntBASIC31.1■■■□□ 2.57
COL3A1P02461 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms