Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
SGCEO43556 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SGCEO43556 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC20.51■□□□□ 0.87
SGCEO43556 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SGCEO43556 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SGCEO43556 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SGCEO43556 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SGCEO43556 ATP5G2P3-201ENST00000429083 425 ntBASIC20.51■□□□□ 0.87
SGCEO43556 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.51■□□□□ 0.87
SGCEO43556 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SGCEO43556 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SGCEO43556 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SGCEO43556 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
SGCEO43556 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SGCEO43556 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.5■□□□□ 0.87
SGCEO43556 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.5■□□□□ 0.87
SGCEO43556 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SGCEO43556 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SGCEO43556 AC004987.1-201ENST00000428627 508 ntBASIC20.5■□□□□ 0.87
SGCEO43556 LONRF2P2-201ENST00000439212 571 ntBASIC20.5■□□□□ 0.87
SGCEO43556 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SGCEO43556 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SGCEO43556 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SGCEO43556 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SGCEO43556 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SGCEO43556 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.5■□□□□ 0.87
SGCEO43556 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SGCEO43556 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.49■□□□□ 0.87
SGCEO43556 AL592295.1-201ENST00000400984 884 ntBASIC20.49■□□□□ 0.87
SGCEO43556 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SGCEO43556 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.49■□□□□ 0.87
SGCEO43556 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SGCEO43556 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SGCEO43556 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SGCEO43556 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SGCEO43556 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SGCEO43556 TSPY13P-201ENST00000338964 914 ntBASIC20.48■□□□□ 0.87
SGCEO43556 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SGCEO43556 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SGCEO43556 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SGCEO43556 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SGCEO43556 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
SGCEO43556 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SGCEO43556 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SGCEO43556 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SGCEO43556 BHLHE23-202ENST00000612929 1109 ntBASIC20.47■□□□□ 0.87
SGCEO43556 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SGCEO43556 AC012354.3-201ENST00000623734 483 ntBASIC20.47■□□□□ 0.87
SGCEO43556 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.46■□□□□ 0.87
SGCEO43556 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SGCEO43556 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SGCEO43556 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.46■□□□□ 0.87
SGCEO43556 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.46■□□□□ 0.87
SGCEO43556 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SGCEO43556 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SGCEO43556 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SGCEO43556 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.45■□□□□ 0.86
SGCEO43556 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SGCEO43556 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.45■□□□□ 0.86
SGCEO43556 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SGCEO43556 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.45■□□□□ 0.86
SGCEO43556 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SGCEO43556 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SGCEO43556 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SGCEO43556 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SGCEO43556 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SGCEO43556 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SGCEO43556 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.44■□□□□ 0.86
SGCEO43556 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
SGCEO43556 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SGCEO43556 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SGCEO43556 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.44■□□□□ 0.86
SGCEO43556 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SGCEO43556 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
SGCEO43556 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SGCEO43556 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SGCEO43556 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.43■□□□□ 0.86
SGCEO43556 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SGCEO43556 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.43■□□□□ 0.86
SGCEO43556 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
SGCEO43556 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SGCEO43556 LINC01124-201ENST00000409786 2117 ntBASIC20.43■□□□□ 0.86
SGCEO43556 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SGCEO43556 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.43■□□□□ 0.86
SGCEO43556 AC019171.1-201ENST00000601251 1056 ntBASIC20.43■□□□□ 0.86
SGCEO43556 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
SGCEO43556 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SGCEO43556 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SGCEO43556 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SGCEO43556 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.43■□□□□ 0.86
SGCEO43556 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.42■□□□□ 0.86
SGCEO43556 AC074183.2-201ENST00000623112 922 ntBASIC20.42■□□□□ 0.86
SGCEO43556 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.42■□□□□ 0.86
SGCEO43556 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SGCEO43556 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.41■□□□□ 0.86
SGCEO43556 AC093323.1-202ENST00000635031 2045 ntBASIC20.41■□□□□ 0.86
SGCEO43556 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SGCEO43556 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SGCEO43556 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SGCEO43556 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms