Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
XRCC3O43542 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.97■□□□□ 0.79
XRCC3O43542 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.97■□□□□ 0.79
XRCC3O43542 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.97■□□□□ 0.79
XRCC3O43542 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.97■□□□□ 0.79
XRCC3O43542 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.96■□□□□ 0.79
XRCC3O43542 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
XRCC3O43542 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.96■□□□□ 0.79
XRCC3O43542 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.96■□□□□ 0.79
XRCC3O43542 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.96■□□□□ 0.79
XRCC3O43542 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
XRCC3O43542 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.96■□□□□ 0.79
XRCC3O43542 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.96■□□□□ 0.79
XRCC3O43542 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
XRCC3O43542 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
XRCC3O43542 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 HGH1-207ENST00000628266 258 ntTSL 5 BASIC19.95■□□□□ 0.78
XRCC3O43542 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
XRCC3O43542 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.94■□□□□ 0.78
XRCC3O43542 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.93■□□□□ 0.78
XRCC3O43542 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
XRCC3O43542 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.93■□□□□ 0.78
XRCC3O43542 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
XRCC3O43542 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
XRCC3O43542 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC19.93■□□□□ 0.78
XRCC3O43542 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.93■□□□□ 0.78
XRCC3O43542 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
XRCC3O43542 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
XRCC3O43542 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.92■□□□□ 0.78
XRCC3O43542 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
XRCC3O43542 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
XRCC3O43542 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
XRCC3O43542 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.92■□□□□ 0.78
XRCC3O43542 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
XRCC3O43542 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
XRCC3O43542 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
XRCC3O43542 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
XRCC3O43542 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
XRCC3O43542 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
XRCC3O43542 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.91■□□□□ 0.78
XRCC3O43542 DUX4L11-201ENST00000611504 1267 ntBASIC19.91■□□□□ 0.78
XRCC3O43542 DUX4L12-201ENST00000614593 1267 ntBASIC19.91■□□□□ 0.78
XRCC3O43542 DUX4L14-201ENST00000621227 1267 ntBASIC19.91■□□□□ 0.78
XRCC3O43542 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
XRCC3O43542 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
XRCC3O43542 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.9■□□□□ 0.78
XRCC3O43542 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.9■□□□□ 0.78
XRCC3O43542 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
XRCC3O43542 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
XRCC3O43542 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC3O43542 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC3O43542 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC3O43542 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.89■□□□□ 0.77
XRCC3O43542 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC3O43542 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC3O43542 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC3O43542 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
XRCC3O43542 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms