Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.9■■□□□ 1.42
CBX4O00257 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.9■■□□□ 1.42
CBX4O00257 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.9■■□□□ 1.42
CBX4O00257 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
CBX4O00257 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
CBX4O00257 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CBX4O00257 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
CBX4O00257 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
CBX4O00257 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CBX4O00257 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CBX4O00257 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
CBX4O00257 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
CBX4O00257 BX664725.1-201ENST00000438252 379 ntBASIC23.88■■□□□ 1.41
CBX4O00257 AC239859.2-201ENST00000444165 318 ntBASIC23.88■■□□□ 1.41
CBX4O00257 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.88■■□□□ 1.41
CBX4O00257 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.88■■□□□ 1.41
CBX4O00257 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
CBX4O00257 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CBX4O00257 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CBX4O00257 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CBX4O00257 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CBX4O00257 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CBX4O00257 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.87■■□□□ 1.41
CBX4O00257 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.87■■□□□ 1.41
CBX4O00257 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.87■■□□□ 1.41
CBX4O00257 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.87■■□□□ 1.41
CBX4O00257 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CBX4O00257 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CBX4O00257 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
CBX4O00257 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.86■■□□□ 1.41
CBX4O00257 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CBX4O00257 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
CBX4O00257 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CBX4O00257 AC022211.4-201ENST00000625094 2161 ntBASIC23.86■■□□□ 1.41
CBX4O00257 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CBX4O00257 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CBX4O00257 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.86■■□□□ 1.41
CBX4O00257 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
CBX4O00257 AC020928.2-201ENST00000588717 2197 ntBASIC23.85■■□□□ 1.41
CBX4O00257 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
CBX4O00257 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
CBX4O00257 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.85■■□□□ 1.41
CBX4O00257 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
CBX4O00257 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
CBX4O00257 Z92544.1-202ENST00000571933 1220 ntBASIC23.85■■□□□ 1.41
CBX4O00257 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.85■■□□□ 1.41
CBX4O00257 AC137630.3-201ENST00000607245 391 ntBASIC23.85■■□□□ 1.41
CBX4O00257 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.85■■□□□ 1.41
CBX4O00257 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.85■■□□□ 1.41
CBX4O00257 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
CBX4O00257 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CBX4O00257 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CBX4O00257 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.84■■□□□ 1.41
CBX4O00257 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CBX4O00257 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CBX4O00257 KRT125P-201ENST00000546827 989 ntBASIC23.84■■□□□ 1.41
CBX4O00257 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.84■■□□□ 1.41
CBX4O00257 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
CBX4O00257 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CBX4O00257 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CBX4O00257 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CBX4O00257 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CBX4O00257 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
CBX4O00257 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CBX4O00257 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
CBX4O00257 AC019069.1-201ENST00000610008 1333 ntBASIC23.83■■□□□ 1.4
CBX4O00257 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.82■■□□□ 1.4
CBX4O00257 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.82■■□□□ 1.4
CBX4O00257 MIR6089-201ENST00000616698 64 ntBASIC23.82■■□□□ 1.4
CBX4O00257 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.82■■□□□ 1.4
CBX4O00257 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CBX4O00257 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CBX4O00257 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CBX4O00257 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CBX4O00257 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.81■■□□□ 1.4
CBX4O00257 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.81■■□□□ 1.4
CBX4O00257 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CBX4O00257 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CBX4O00257 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CBX4O00257 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.8■■□□□ 1.4
CBX4O00257 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
CBX4O00257 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
CBX4O00257 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CBX4O00257 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC23.79■■□□□ 1.4
CBX4O00257 AL356441.2-201ENST00000443009 864 ntBASIC23.79■■□□□ 1.4
CBX4O00257 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.79■■□□□ 1.4
CBX4O00257 MIR4787-201ENST00000607364 84 ntBASIC23.79■■□□□ 1.4
CBX4O00257 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.79■■□□□ 1.4
CBX4O00257 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.79■■□□□ 1.4
CBX4O00257 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CBX4O00257 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CBX4O00257 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.78■■□□□ 1.4
CBX4O00257 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.78■■□□□ 1.4
CBX4O00257 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CBX4O00257 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.78■■□□□ 1.4
CBX4O00257 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CBX4O00257 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.78■■□□□ 1.4
CBX4O00257 AF131216.4-201ENST00000638924 1588 ntBASIC23.78■■□□□ 1.4
CBX4O00257 AC021242.3-201ENST00000607598 1377 ntBASIC23.78■■□□□ 1.4
CBX4O00257 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms