Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL6A6A6NMZ7 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL6A6A6NMZ7 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL6A6A6NMZ7 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL6A6A6NMZ7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 DUX4L2-201ENST00000561772 1275 ntBASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 DUX4L6-201ENST00000626483 1275 ntBASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 DUX4L1-201ENST00000627662 1275 ntBASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 DUX4L8-201ENST00000629013 1275 ntBASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 DUX4L3-201ENST00000630187 1275 ntBASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 DUX4L7-201ENST00000630678 1275 ntBASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 DUX4L5-201ENST00000630834 1275 ntBASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
COL6A6A6NMZ7 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
COL6A6A6NMZ7 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.33■■□□□ 1.01
COL6A6A6NMZ7 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.33■■□□□ 1.01
COL6A6A6NMZ7 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL6A6A6NMZ7 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL6A6A6NMZ7 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.32■■□□□ 1
COL6A6A6NMZ7 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.32■■□□□ 1
COL6A6A6NMZ7 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
COL6A6A6NMZ7 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL6A6A6NMZ7 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL6A6A6NMZ7 AC008764.7-201ENST00000593779 1081 ntBASIC21.32■■□□□ 1
COL6A6A6NMZ7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL6A6A6NMZ7 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
COL6A6A6NMZ7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.31■■□□□ 1
COL6A6A6NMZ7 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL6A6A6NMZ7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
COL6A6A6NMZ7 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL6A6A6NMZ7 ABHD17AP1-201ENST00000358206 933 ntBASIC21.31■■□□□ 1
COL6A6A6NMZ7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.31■■□□□ 1
COL6A6A6NMZ7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL6A6A6NMZ7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL6A6A6NMZ7 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.31■■□□□ 1
COL6A6A6NMZ7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL6A6A6NMZ7 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.3■■□□□ 1
COL6A6A6NMZ7 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL6A6A6NMZ7 AL138724.1-201ENST00000606771 1088 ntBASIC21.3■■□□□ 1
COL6A6A6NMZ7 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.3■■□□□ 1
COL6A6A6NMZ7 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.3■■□□□ 1
COL6A6A6NMZ7 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.3■■□□□ 1
COL6A6A6NMZ7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL6A6A6NMZ7 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
COL6A6A6NMZ7 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL6A6A6NMZ7 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
COL6A6A6NMZ7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.29■■□□□ 1
COL6A6A6NMZ7 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
COL6A6A6NMZ7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.29■■□□□ 1
COL6A6A6NMZ7 AL031602.1-201ENST00000633169 911 ntBASIC21.29■■□□□ 1
COL6A6A6NMZ7 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
COL6A6A6NMZ7 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL6A6A6NMZ7 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
COL6A6A6NMZ7 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL6A6A6NMZ7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.29■■□□□ 1
COL6A6A6NMZ7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.29■■□□□ 1
COL6A6A6NMZ7 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.29■■□□□ 1
COL6A6A6NMZ7 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC21.28■■□□□ 1
COL6A6A6NMZ7 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL6A6A6NMZ7 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.28■■□□□ 1
COL6A6A6NMZ7 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.28■■□□□ 1
COL6A6A6NMZ7 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.28■■□□□ 1
COL6A6A6NMZ7 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL6A6A6NMZ7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.27■■□□□ 1
COL6A6A6NMZ7 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
COL6A6A6NMZ7 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL6A6A6NMZ7 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.27■■□□□ 1
COL6A6A6NMZ7 AC099791.1-201ENST00000416440 715 ntBASIC21.27■■□□□ 1
COL6A6A6NMZ7 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL6A6A6NMZ7 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.27■■□□□ 1
COL6A6A6NMZ7 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A6A6NMZ7 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
COL6A6A6NMZ7 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.26■□□□□ 0.99
COL6A6A6NMZ7 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.26■□□□□ 0.99
COL6A6A6NMZ7 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A6A6NMZ7 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A6A6NMZ7 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.26■□□□□ 0.99
COL6A6A6NMZ7 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A6A6NMZ7 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.26■□□□□ 0.99
COL6A6A6NMZ7 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL6A6A6NMZ7 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL6A6A6NMZ7 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.25■□□□□ 0.99
COL6A6A6NMZ7 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL6A6A6NMZ7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.25■□□□□ 0.99
COL6A6A6NMZ7 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
COL6A6A6NMZ7 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL6A6A6NMZ7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL6A6A6NMZ7 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL6A6A6NMZ7 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
COL6A6A6NMZ7 AC004911.1-201ENST00000416316 871 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 8.8 ms