Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SMIM28A0A1B0GU29 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SMIM28A0A1B0GU29 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.23■■□□□ 1.63
SMIM28A0A1B0GU29 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SMIM28A0A1B0GU29 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.23■■□□□ 1.63
SMIM28A0A1B0GU29 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SMIM28A0A1B0GU29 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SMIM28A0A1B0GU29 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
SMIM28A0A1B0GU29 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC25.22■■□□□ 1.63
SMIM28A0A1B0GU29 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
SMIM28A0A1B0GU29 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SMIM28A0A1B0GU29 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SMIM28A0A1B0GU29 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC25.22■■□□□ 1.63
SMIM28A0A1B0GU29 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.22■■□□□ 1.63
SMIM28A0A1B0GU29 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC25.22■■□□□ 1.63
SMIM28A0A1B0GU29 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SMIM28A0A1B0GU29 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SMIM28A0A1B0GU29 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SMIM28A0A1B0GU29 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.21■■□□□ 1.63
SMIM28A0A1B0GU29 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SMIM28A0A1B0GU29 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.63
SMIM28A0A1B0GU29 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
SMIM28A0A1B0GU29 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC25.2■■□□□ 1.63
SMIM28A0A1B0GU29 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SMIM28A0A1B0GU29 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC25.2■■□□□ 1.62
SMIM28A0A1B0GU29 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.2■■□□□ 1.62
SMIM28A0A1B0GU29 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC25.2■■□□□ 1.62
SMIM28A0A1B0GU29 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
SMIM28A0A1B0GU29 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SMIM28A0A1B0GU29 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SMIM28A0A1B0GU29 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SMIM28A0A1B0GU29 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.19■■□□□ 1.62
SMIM28A0A1B0GU29 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SMIM28A0A1B0GU29 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC25.19■■□□□ 1.62
SMIM28A0A1B0GU29 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.19■■□□□ 1.62
SMIM28A0A1B0GU29 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.19■■□□□ 1.62
SMIM28A0A1B0GU29 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SMIM28A0A1B0GU29 AC010997.5-201ENST00000609182 354 ntBASIC25.18■■□□□ 1.62
SMIM28A0A1B0GU29 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.18■■□□□ 1.62
SMIM28A0A1B0GU29 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
SMIM28A0A1B0GU29 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SMIM28A0A1B0GU29 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC25.17■■□□□ 1.62
SMIM28A0A1B0GU29 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
SMIM28A0A1B0GU29 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SMIM28A0A1B0GU29 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC25.17■■□□□ 1.62
SMIM28A0A1B0GU29 CLTA-210ENST00000540080 989 ntTSL 2 BASIC25.17■■□□□ 1.62
SMIM28A0A1B0GU29 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SMIM28A0A1B0GU29 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SMIM28A0A1B0GU29 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SMIM28A0A1B0GU29 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
SMIM28A0A1B0GU29 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMIM28A0A1B0GU29 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMIM28A0A1B0GU29 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMIM28A0A1B0GU29 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMIM28A0A1B0GU29 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SMIM28A0A1B0GU29 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SMIM28A0A1B0GU29 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.15■■□□□ 1.62
SMIM28A0A1B0GU29 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC25.15■■□□□ 1.62
SMIM28A0A1B0GU29 MIR6089-201ENST00000616698 64 ntBASIC25.15■■□□□ 1.62
SMIM28A0A1B0GU29 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC25.15■■□□□ 1.62
SMIM28A0A1B0GU29 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SMIM28A0A1B0GU29 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.15■■□□□ 1.62
SMIM28A0A1B0GU29 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.14■■□□□ 1.62
SMIM28A0A1B0GU29 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.14■■□□□ 1.62
SMIM28A0A1B0GU29 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SMIM28A0A1B0GU29 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SMIM28A0A1B0GU29 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.14■■□□□ 1.62
SMIM28A0A1B0GU29 MTDHP2-201ENST00000601468 714 ntBASIC25.14■■□□□ 1.62
SMIM28A0A1B0GU29 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.14■■□□□ 1.61
SMIM28A0A1B0GU29 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SMIM28A0A1B0GU29 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
SMIM28A0A1B0GU29 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SMIM28A0A1B0GU29 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.13■■□□□ 1.61
SMIM28A0A1B0GU29 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
SMIM28A0A1B0GU29 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.13■■□□□ 1.61
SMIM28A0A1B0GU29 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SMIM28A0A1B0GU29 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SMIM28A0A1B0GU29 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.12■■□□□ 1.61
SMIM28A0A1B0GU29 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SMIM28A0A1B0GU29 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC25.12■■□□□ 1.61
SMIM28A0A1B0GU29 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.12■■□□□ 1.61
SMIM28A0A1B0GU29 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SMIM28A0A1B0GU29 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SMIM28A0A1B0GU29 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
SMIM28A0A1B0GU29 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SMIM28A0A1B0GU29 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
SMIM28A0A1B0GU29 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SMIM28A0A1B0GU29 SNX5-217ENST00000606557 1087 ntBASIC25.11■■□□□ 1.61
SMIM28A0A1B0GU29 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SMIM28A0A1B0GU29 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC25.11■■□□□ 1.61
SMIM28A0A1B0GU29 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC25.1■■□□□ 1.61
SMIM28A0A1B0GU29 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 849.4 ms