Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 PAUPAR-201ENST00000630360 2965 ntBASIC15.69■□□□□ 0.1
TRIM39Q9HCM9 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 TERF1P3-201ENST00000505638 1227 ntBASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 HNRNPUP1-201ENST00000554987 333 ntBASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 AC097359.3-201ENST00000603982 1210 ntBASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM39Q9HCM9 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 SPTLC1P1-201ENST00000447199 261 ntBASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 TIMM17BP1-201ENST00000545713 516 ntBASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 SRD5A3P1-201ENST00000603021 949 ntBASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 AC010491.1-201ENST00000563101 2797 ntBASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TRIM39Q9HCM9 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms