Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 KCP-203ENST00000610776 5108 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 PGR-210ENST00000619228 3038 ntTSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
LINC00477Q96M19 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
LINC00477Q96M19 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 KRT8P37-201ENST00000451609 1420 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 FOXO1B-201ENST00000504678 1527 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 AC127383.1-201ENST00000444697 1800 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 MIR346-201ENST00000362234 95 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 AL590627.1-203ENST00000421194 1026 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 MED15P5-201ENST00000423150 992 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 AC142381.1-201ENST00000426099 345 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SPDYE11-202ENST00000450699 704 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 IGHV3-62-201ENST00000520057 340 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SPDYE9P-201ENST00000570642 692 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SPDYE10P-202ENST00000612005 668 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 SPDYE8P-202ENST00000612377 668 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 AC126365.1-201ENST00000578585 1514 ntBASIC11.86□□□□□ -0.51
LINC00477Q96M19 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
LINC00477Q96M19 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
LINC00477Q96M19 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC11.85□□□□□ -0.51
LINC00477Q96M19 AC023824.1-201ENST00000562945 2975 ntBASIC11.85□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms