Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 SPTLC1P1-201ENST00000447199 261 ntBASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 RBM7-207ENST00000544582 692 ntTSL 3 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 MIR4321-201ENST00000592276 80 ntBASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 MIR6069-201ENST00000620069 79 ntBASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 AL358472.5-202ENST00000641448 1267 ntBASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLIP3Q96DZ5 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 AL512361.1-201ENST00000554200 418 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 AC010336.2-201ENST00000564226 506 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 AL035252.4-201ENST00000624174 288 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 AC004840.1-201ENST00000636359 365 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 AL033527.5-202ENST00000641632 1098 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 BTBD7P1-201ENST00000447253 1453 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 AC007541.1-201ENST00000570282 1469 ntBASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CLIP3Q96DZ5 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLIP3Q96DZ5 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms