Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH6P52701 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
MSH6P52701 RPS15-201ENST00000233609 534 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH6P52701 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
MSH6P52701 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH6P52701 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
MSH6P52701 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH6P52701 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC21.46■■□□□ 1.03
MSH6P52701 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH6P52701 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MSH6P52701 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
MSH6P52701 RNMTL1P1-201ENST00000454103 560 ntBASIC21.46■■□□□ 1.03
MSH6P52701 AC125604.1-201ENST00000496255 707 ntBASIC21.46■■□□□ 1.03
MSH6P52701 AL391280.1-201ENST00000506969 1062 ntBASIC21.46■■□□□ 1.03
MSH6P52701 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC21.46■■□□□ 1.03
MSH6P52701 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC21.46■■□□□ 1.03
MSH6P52701 RPS15-205ENST00000586686 562 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH6P52701 RPS15-208ENST00000591804 711 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH6P52701 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH6P52701 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH6P52701 WT1-AS_6.1-201ENST00000614919 121 ntBASIC21.46■■□□□ 1.03
MSH6P52701 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH6P52701 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
MSH6P52701 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.03
MSH6P52701 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
MSH6P52701 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
MSH6P52701 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC21.45■■□□□ 1.02
MSH6P52701 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
MSH6P52701 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.45■■□□□ 1.02
MSH6P52701 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
MSH6P52701 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC21.45■■□□□ 1.02
MSH6P52701 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC21.45■■□□□ 1.02
MSH6P52701 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 PTK2-225ENST00000520892 571 ntTSL 4 BASIC21.45■■□□□ 1.02
MSH6P52701 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC21.45■■□□□ 1.02
MSH6P52701 AL805961.1-201ENST00000642026 753 ntBASIC21.45■■□□□ 1.02
MSH6P52701 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH6P52701 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
MSH6P52701 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
MSH6P52701 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 AL157791.1-201ENST00000553667 1699 ntBASIC21.44■■□□□ 1.02
MSH6P52701 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
MSH6P52701 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC21.44■■□□□ 1.02
MSH6P52701 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC21.44■■□□□ 1.02
MSH6P52701 POM121L8P-201ENST00000417732 1281 ntBASIC21.44■■□□□ 1.02
MSH6P52701 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC21.44■■□□□ 1.02
MSH6P52701 POM121L9P-203ENST00000441984 1285 ntBASIC21.44■■□□□ 1.02
MSH6P52701 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC21.44■■□□□ 1.02
MSH6P52701 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
MSH6P52701 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
MSH6P52701 AP001065.2-201ENST00000617205 644 ntBASIC21.44■■□□□ 1.02
MSH6P52701 CDK7-214ENST00000626796 358 ntTSL 5 BASIC21.44■■□□□ 1.02
MSH6P52701 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC21.44■■□□□ 1.02
MSH6P52701 AC004923.1-202ENST00000642106 209 ntBASIC21.44■■□□□ 1.02
MSH6P52701 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
MSH6P52701 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
MSH6P52701 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC21.44■■□□□ 1.02
MSH6P52701 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
MSH6P52701 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
MSH6P52701 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
MSH6P52701 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
MSH6P52701 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH6P52701 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC21.43■■□□□ 1.02
MSH6P52701 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
MSH6P52701 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.43■■□□□ 1.02
MSH6P52701 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
MSH6P52701 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH6P52701 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms