Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PTPN9P43378 AC138969.3-201ENST00000546612 1459 ntBASIC16.35■□□□□ 0.21
PTPN9P43378 AC138932.2-201ENST00000548268 1459 ntBASIC16.35■□□□□ 0.21
PTPN9P43378 AC126755.4-201ENST00000549796 1459 ntBASIC16.35■□□□□ 0.21
PTPN9P43378 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.35■□□□□ 0.21
PTPN9P43378 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.35■□□□□ 0.21
PTPN9P43378 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.35■□□□□ 0.21
PTPN9P43378 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.35■□□□□ 0.21
PTPN9P43378 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.35■□□□□ 0.21
PTPN9P43378 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PTPN9P43378 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 AC027796.2-201ENST00000575326 344 ntBASIC16.35■□□□□ 0.21
PTPN9P43378 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.35■□□□□ 0.21
PTPN9P43378 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.35■□□□□ 0.21
PTPN9P43378 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
PTPN9P43378 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.35■□□□□ 0.21
PTPN9P43378 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.35■□□□□ 0.21
PTPN9P43378 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.35■□□□□ 0.21
PTPN9P43378 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.35■□□□□ 0.21
PTPN9P43378 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PTPN9P43378 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.35■□□□□ 0.21
PTPN9P43378 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PTPN9P43378 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PTPN9P43378 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN9P43378 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
PTPN9P43378 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN9P43378 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN9P43378 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.34■□□□□ 0.21
PTPN9P43378 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN9P43378 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 C18orf15-201ENST00000623680 2534 ntBASIC16.34■□□□□ 0.21
PTPN9P43378 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
PTPN9P43378 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN9P43378 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN9P43378 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 KRT18P43-201ENST00000469825 1281 ntBASIC16.34■□□□□ 0.21
PTPN9P43378 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN9P43378 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN9P43378 TIMM17BP1-201ENST00000545713 516 ntBASIC16.34■□□□□ 0.21
PTPN9P43378 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.34■□□□□ 0.21
PTPN9P43378 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.34■□□□□ 0.21
PTPN9P43378 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PTPN9P43378 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PTPN9P43378 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.34■□□□□ 0.21
PTPN9P43378 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PTPN9P43378 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.33■□□□□ 0.21
PTPN9P43378 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
PTPN9P43378 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.33■□□□□ 0.21
PTPN9P43378 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN9P43378 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.33■□□□□ 0.21
PTPN9P43378 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN9P43378 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN9P43378 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN9P43378 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
PTPN9P43378 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PTPN9P43378 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.33■□□□□ 0.21
PTPN9P43378 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.21
PTPN9P43378 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
PTPN9P43378 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms