Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC17.27■□□□□ 0.36
HTTP42858 AC090164.2-201ENST00000611487 516 ntBASIC17.27■□□□□ 0.36
HTTP42858 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.27■□□□□ 0.36
HTTP42858 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.27■□□□□ 0.36
HTTP42858 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
HTTP42858 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 SOD2-202ENST00000367054 815 ntTSL 2 BASIC17.27■□□□□ 0.36
HTTP42858 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
HTTP42858 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
HTTP42858 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.27■□□□□ 0.36
HTTP42858 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.27■□□□□ 0.36
HTTP42858 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
HTTP42858 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 AC009779.1-201ENST00000551138 283 ntBASIC17.27■□□□□ 0.36
HTTP42858 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC17.27■□□□□ 0.36
HTTP42858 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HTTP42858 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
HTTP42858 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HTTP42858 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HTTP42858 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HTTP42858 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HTTP42858 AP002803.1-201ENST00000528836 498 ntBASIC17.27■□□□□ 0.35
HTTP42858 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HTTP42858 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
HTTP42858 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC17.27■□□□□ 0.35
HTTP42858 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC17.27■□□□□ 0.35
HTTP42858 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HTTP42858 AL157414.3-201ENST00000624276 1954 ntBASIC17.27■□□□□ 0.35
HTTP42858 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.27■□□□□ 0.35
HTTP42858 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HTTP42858 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HTTP42858 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.26■□□□□ 0.35
HTTP42858 OR2K2-202ENST00000374428 1038 ntBASIC17.26■□□□□ 0.35
HTTP42858 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC17.26■□□□□ 0.35
HTTP42858 FAU-202ENST00000434372 533 ntTSL 2 BASIC17.26■□□□□ 0.35
HTTP42858 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HTTP42858 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC17.26■□□□□ 0.35
HTTP42858 AP003392.6-201ENST00000607709 325 ntBASIC17.26■□□□□ 0.35
HTTP42858 AL358472.3-201ENST00000608147 415 ntBASIC17.26■□□□□ 0.35
HTTP42858 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HTTP42858 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HTTP42858 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HTTP42858 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HTTP42858 AC022211.2-201ENST00000585075 2527 ntBASIC17.26■□□□□ 0.35
HTTP42858 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.26■□□□□ 0.35
HTTP42858 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HTTP42858 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HTTP42858 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HTTP42858 SCARNA21-201ENST00000517026 139 ntBASIC17.26■□□□□ 0.35
HTTP42858 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
HTTP42858 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC17.26■□□□□ 0.35
HTTP42858 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HTTP42858 STUB1-204ENST00000564370 875 ntTSL 2 BASIC17.26■□□□□ 0.35
HTTP42858 OR10B1P-201ENST00000601666 907 ntBASIC17.26■□□□□ 0.35
HTTP42858 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HTTP42858 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HTTP42858 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
HTTP42858 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HTTP42858 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.25■□□□□ 0.35
HTTP42858 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
HTTP42858 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 IRF3-215ENST00000596822 823 ntTSL 3 BASIC17.25■□□□□ 0.35
HTTP42858 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC17.25■□□□□ 0.35
HTTP42858 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC17.25■□□□□ 0.35
HTTP42858 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
HTTP42858 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HTTP42858 AC009090.5-201ENST00000624886 2285 ntBASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms