Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CTBP2P3-201ENST00000585629 1255 ntBASIC14.49□□□□□ -0.09
RFC3P40938 IGHV3-72-202ENST00000621503 303 ntBASIC14.49□□□□□ -0.09
RFC3P40938 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.49□□□□□ -0.09
RFC3P40938 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFC3P40938 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFC3P40938 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.49□□□□□ -0.09
RFC3P40938 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.49□□□□□ -0.09
RFC3P40938 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.49□□□□□ -0.09
RFC3P40938 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFC3P40938 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFC3P40938 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFC3P40938 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFC3P40938 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
RFC3P40938 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFC3P40938 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
RFC3P40938 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.48□□□□□ -0.09
RFC3P40938 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 AC018892.3-201ENST00000623986 2499 ntBASIC14.48□□□□□ -0.09
RFC3P40938 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
RFC3P40938 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 HAUS4P1-201ENST00000406739 1145 ntBASIC14.48□□□□□ -0.09
RFC3P40938 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.48□□□□□ -0.09
RFC3P40938 MEIS3P1-201ENST00000495167 958 ntBASIC14.48□□□□□ -0.09
RFC3P40938 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.48□□□□□ -0.09
RFC3P40938 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.48□□□□□ -0.09
RFC3P40938 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.48□□□□□ -0.09
RFC3P40938 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.48□□□□□ -0.09
RFC3P40938 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.48□□□□□ -0.09
RFC3P40938 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.48□□□□□ -0.09
RFC3P40938 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
RFC3P40938 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
RFC3P40938 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
RFC3P40938 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.48□□□□□ -0.09
RFC3P40938 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
RFC3P40938 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
RFC3P40938 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
RFC3P40938 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
RFC3P40938 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.47□□□□□ -0.09
RFC3P40938 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
RFC3P40938 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.47□□□□□ -0.09
RFC3P40938 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
RFC3P40938 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.47□□□□□ -0.09
RFC3P40938 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
RFC3P40938 CLK3P2-201ENST00000427566 1453 ntBASIC14.47□□□□□ -0.09
RFC3P40938 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 AC098614.1-201ENST00000368528 745 ntBASIC14.47□□□□□ -0.09
RFC3P40938 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.47□□□□□ -0.09
RFC3P40938 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.47□□□□□ -0.09
RFC3P40938 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.47□□□□□ -0.09
RFC3P40938 ELK1P1-201ENST00000485699 580 ntBASIC14.47□□□□□ -0.09
RFC3P40938 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.47□□□□□ -0.09
RFC3P40938 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
RFC3P40938 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RFC3P40938 AC092337.1-201ENST00000568699 1129 ntBASIC14.47□□□□□ -0.09
RFC3P40938 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.47□□□□□ -0.09
RFC3P40938 MIR8072-201ENST00000614241 80 ntBASIC14.47□□□□□ -0.09
RFC3P40938 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
RFC3P40938 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms