Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
HLA-DPB1P04440 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DPB1P04440 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HLA-DPB1P04440 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DPB1P04440 MROH4P-201ENST00000431302 1578 ntBASIC14.26□□□□□ -0.13
HLA-DPB1P04440 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DPB1P04440 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.25□□□□□ -0.13
HLA-DPB1P04440 KRT18P58-201ENST00000527480 1120 ntBASIC14.25□□□□□ -0.13
HLA-DPB1P04440 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DPB1P04440 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 AL671883.3-201ENST00000603274 991 ntBASIC14.24□□□□□ -0.13
HLA-DPB1P04440 AL365330.1-201ENST00000607459 531 ntBASIC14.24□□□□□ -0.13
HLA-DPB1P04440 AC021097.1-201ENST00000607902 574 ntBASIC14.24□□□□□ -0.13
HLA-DPB1P04440 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPB1P04440 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms