Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
VPS4BO75351 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
VPS4BO75351 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 AC107890.1-201ENST00000422478 521 ntBASIC15.53■□□□□ 0.08
VPS4BO75351 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.53■□□□□ 0.08
VPS4BO75351 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.53■□□□□ 0.08
VPS4BO75351 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.53■□□□□ 0.08
VPS4BO75351 AC125807.1-201ENST00000483097 614 ntBASIC15.53■□□□□ 0.08
VPS4BO75351 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.53■□□□□ 0.08
VPS4BO75351 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.53■□□□□ 0.08
VPS4BO75351 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 PRYP6-201ENST00000514804 343 ntBASIC15.53■□□□□ 0.08
VPS4BO75351 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.53■□□□□ 0.08
VPS4BO75351 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.53■□□□□ 0.08
VPS4BO75351 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.53■□□□□ 0.08
VPS4BO75351 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.53■□□□□ 0.08
VPS4BO75351 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC15.53■□□□□ 0.08
VPS4BO75351 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.53■□□□□ 0.08
VPS4BO75351 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 AC138035.3-201ENST00000622706 2791 ntBASIC15.53■□□□□ 0.08
VPS4BO75351 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
VPS4BO75351 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.53■□□□□ 0.08
VPS4BO75351 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS4BO75351 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
VPS4BO75351 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS4BO75351 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
VPS4BO75351 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
VPS4BO75351 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS4BO75351 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS4BO75351 AL355306.1-201ENST00000415580 579 ntBASIC15.52■□□□□ 0.08
VPS4BO75351 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS4BO75351 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS4BO75351 RN7SL589P-201ENST00000481268 310 ntBASIC15.52■□□□□ 0.08
VPS4BO75351 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
VPS4BO75351 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.52■□□□□ 0.08
VPS4BO75351 AC051619.7-201ENST00000568314 623 ntBASIC15.52■□□□□ 0.08
VPS4BO75351 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.52■□□□□ 0.08
VPS4BO75351 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS4BO75351 AL161645.1-201ENST00000622716 1255 ntBASIC15.52■□□□□ 0.08
VPS4BO75351 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.52■□□□□ 0.08
VPS4BO75351 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
VPS4BO75351 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VPS4BO75351 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.52■□□□□ 0.08
VPS4BO75351 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS4BO75351 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
VPS4BO75351 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS4BO75351 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
VPS4BO75351 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS4BO75351 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.52■□□□□ 0.07
VPS4BO75351 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS4BO75351 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS4BO75351 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS4BO75351 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
VPS4BO75351 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS4BO75351 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.52■□□□□ 0.07
VPS4BO75351 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS4BO75351 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS4BO75351 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
VPS4BO75351 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.52■□□□□ 0.07
VPS4BO75351 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.51■□□□□ 0.07
VPS4BO75351 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 AC134407.2-201ENST00000625089 1978 ntBASIC15.51■□□□□ 0.07
VPS4BO75351 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VPS4BO75351 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms