Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC19.86■□□□□ 0.77
NPHP1O15259 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
NPHP1O15259 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
NPHP1O15259 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
NPHP1O15259 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
NPHP1O15259 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
NPHP1O15259 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.85■□□□□ 0.77
NPHP1O15259 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.85■□□□□ 0.77
NPHP1O15259 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP1O15259 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP1O15259 AC108725.1-201ENST00000495472 409 ntBASIC19.85■□□□□ 0.77
NPHP1O15259 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.85■□□□□ 0.77
NPHP1O15259 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC19.85■□□□□ 0.77
NPHP1O15259 AC079316.1-201ENST00000548397 411 ntBASIC19.85■□□□□ 0.77
NPHP1O15259 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
NPHP1O15259 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
NPHP1O15259 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC19.85■□□□□ 0.77
NPHP1O15259 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP1O15259 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
NPHP1O15259 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP1O15259 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.85■□□□□ 0.77
NPHP1O15259 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
NPHP1O15259 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.84■□□□□ 0.77
NPHP1O15259 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.84■□□□□ 0.77
NPHP1O15259 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP1O15259 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 C2orf27AP3-201ENST00000434123 579 ntBASIC19.84■□□□□ 0.77
NPHP1O15259 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.84■□□□□ 0.77
NPHP1O15259 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC19.84■□□□□ 0.77
NPHP1O15259 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.84■□□□□ 0.77
NPHP1O15259 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC19.84■□□□□ 0.77
NPHP1O15259 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC19.84■□□□□ 0.77
NPHP1O15259 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP1O15259 AL354718.3-201ENST00000616414 581 ntBASIC19.84■□□□□ 0.77
NPHP1O15259 CR382287.1-201ENST00000623954 586 ntBASIC19.84■□□□□ 0.77
NPHP1O15259 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC19.84■□□□□ 0.77
NPHP1O15259 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
NPHP1O15259 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
NPHP1O15259 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.84■□□□□ 0.77
NPHP1O15259 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.84■□□□□ 0.77
NPHP1O15259 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
NPHP1O15259 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
NPHP1O15259 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.84■□□□□ 0.77
NPHP1O15259 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
NPHP1O15259 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.83■□□□□ 0.77
NPHP1O15259 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.83■□□□□ 0.77
NPHP1O15259 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.83■□□□□ 0.77
NPHP1O15259 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC19.83■□□□□ 0.77
NPHP1O15259 TOMM22P5-201ENST00000416399 439 ntBASIC19.83■□□□□ 0.77
NPHP1O15259 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC19.83■□□□□ 0.77
NPHP1O15259 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC19.83■□□□□ 0.77
NPHP1O15259 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.83■□□□□ 0.77
NPHP1O15259 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC19.83■□□□□ 0.77
NPHP1O15259 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NPHP1O15259 AP001063.1-201ENST00000568332 529 ntBASIC19.83■□□□□ 0.77
NPHP1O15259 AC009542.2-202ENST00000619004 1067 ntBASIC19.83■□□□□ 0.77
NPHP1O15259 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.83■□□□□ 0.76
NPHP1O15259 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP1O15259 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.83■□□□□ 0.76
NPHP1O15259 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
NPHP1O15259 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms