Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 AL607033.1-201ENST00000623900 1599 ntBASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 NKILA-202ENST00000614771 2598 ntBASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 RN7SL190P-201ENST00000582519 257 ntBASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 AC011676.5-201ENST00000624864 2660 ntBASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 BTBD6P1-201ENST00000412176 1267 ntBASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 RNA5SP423-201ENST00000517127 109 ntBASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 AP005019.2-201ENST00000615104 511 ntBASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 AC132938.4-201ENST00000623835 848 ntBASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 AL121723.1-201ENST00000445194 1519 ntBASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms