Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.98■□□□□ 0.47
ERCC4Q92889 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.98■□□□□ 0.47
ERCC4Q92889 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.98■□□□□ 0.47
ERCC4Q92889 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
ERCC4Q92889 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
ERCC4Q92889 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.97■□□□□ 0.47
ERCC4Q92889 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.97■□□□□ 0.47
ERCC4Q92889 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
ERCC4Q92889 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.97■□□□□ 0.47
ERCC4Q92889 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
ERCC4Q92889 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.97■□□□□ 0.47
ERCC4Q92889 AC073389.1-201ENST00000595595 795 ntBASIC17.97■□□□□ 0.47
ERCC4Q92889 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
ERCC4Q92889 SPTSSB-204ENST00000617024 1292 ntBASIC17.97■□□□□ 0.47
ERCC4Q92889 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
ERCC4Q92889 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
ERCC4Q92889 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.97■□□□□ 0.47
ERCC4Q92889 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.97■□□□□ 0.47
ERCC4Q92889 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.97■□□□□ 0.47
ERCC4Q92889 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
ERCC4Q92889 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.97■□□□□ 0.47
ERCC4Q92889 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
ERCC4Q92889 REXO1L1P-202ENST00000608646 1974 ntBASIC17.97■□□□□ 0.47
ERCC4Q92889 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
ERCC4Q92889 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.97■□□□□ 0.47
ERCC4Q92889 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.96■□□□□ 0.47
ERCC4Q92889 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.96■□□□□ 0.47
ERCC4Q92889 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
ERCC4Q92889 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
ERCC4Q92889 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
ERCC4Q92889 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 AC002056.1-201ENST00000395613 760 ntBASIC17.96■□□□□ 0.47
ERCC4Q92889 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.96■□□□□ 0.47
ERCC4Q92889 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
ERCC4Q92889 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
ERCC4Q92889 AC023274.1-201ENST00000418278 595 ntBASIC17.96■□□□□ 0.47
ERCC4Q92889 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.96■□□□□ 0.47
ERCC4Q92889 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.96■□□□□ 0.47
ERCC4Q92889 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.96■□□□□ 0.47
ERCC4Q92889 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.96■□□□□ 0.47
ERCC4Q92889 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.96■□□□□ 0.47
ERCC4Q92889 AL135744.1-201ENST00000565098 629 ntBASIC17.96■□□□□ 0.47
ERCC4Q92889 RARRES2P8-201ENST00000566335 367 ntBASIC17.96■□□□□ 0.47
ERCC4Q92889 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.96■□□□□ 0.47
ERCC4Q92889 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.96■□□□□ 0.47
ERCC4Q92889 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.96■□□□□ 0.47
ERCC4Q92889 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.96■□□□□ 0.47
ERCC4Q92889 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
ERCC4Q92889 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.96■□□□□ 0.47
ERCC4Q92889 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.96■□□□□ 0.47
ERCC4Q92889 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.96■□□□□ 0.47
ERCC4Q92889 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ERCC4Q92889 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.96■□□□□ 0.47
ERCC4Q92889 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
ERCC4Q92889 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
ERCC4Q92889 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.96■□□□□ 0.46
ERCC4Q92889 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.95■□□□□ 0.46
ERCC4Q92889 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.95■□□□□ 0.46
ERCC4Q92889 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.95■□□□□ 0.46
ERCC4Q92889 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
ERCC4Q92889 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ERCC4Q92889 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.95■□□□□ 0.46
ERCC4Q92889 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.95■□□□□ 0.46
ERCC4Q92889 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.95■□□□□ 0.46
ERCC4Q92889 AC027307.2-201ENST00000591252 911 ntBASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms