Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 AC105250.1-201ENST00000509378 2057 ntBASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 MIR346-201ENST00000362234 95 ntBASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 MED15P5-201ENST00000423150 992 ntBASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 EEF1DP4-201ENST00000446006 880 ntBASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 RNA5SP410-201ENST00000516285 106 ntBASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 AC106730.1-201ENST00000566722 1090 ntBASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 AL138918.1-201ENST00000568306 659 ntBASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 AL513190.1-201ENST00000621254 727 ntBASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 BNIP3P1-202ENST00000550043 1585 ntBASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CCDC54Q8NEL0 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 REXO1L1P-202ENST00000608646 1974 ntBASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 AL590627.1-203ENST00000421194 1026 ntBASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 AL450472.2-201ENST00000603663 1156 ntBASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC54Q8NEL0 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 PPT1-215ENST00000641471 2368 ntBASIC13.81□□□□□ -0.2
CCDC54Q8NEL0 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms