Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 REXO1L1P-202ENST00000608646 1974 ntBASIC14.03□□□□□ -0.16
SKA3Q8IX90 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.03□□□□□ -0.16
SKA3Q8IX90 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 FAM86GP-201ENST00000448322 971 ntBASIC14.03□□□□□ -0.16
SKA3Q8IX90 KLF2P3-201ENST00000451977 1087 ntBASIC14.03□□□□□ -0.16
SKA3Q8IX90 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 AL079307.3-201ENST00000556114 283 ntBASIC14.03□□□□□ -0.16
SKA3Q8IX90 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 AC015911.4-201ENST00000588022 1070 ntBASIC14.03□□□□□ -0.16
SKA3Q8IX90 AL589739.1-201ENST00000607720 493 ntBASIC14.03□□□□□ -0.16
SKA3Q8IX90 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 AP005117.1-202ENST00000581724 1908 ntBASIC14.03□□□□□ -0.16
SKA3Q8IX90 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SKA3Q8IX90 CICP13-201ENST00000422015 2789 ntBASIC14.03□□□□□ -0.16
SKA3Q8IX90 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SKA3Q8IX90 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 AC018892.3-201ENST00000623986 2499 ntBASIC14.02□□□□□ -0.16
SKA3Q8IX90 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.02□□□□□ -0.16
SKA3Q8IX90 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SKA3Q8IX90 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
SKA3Q8IX90 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SKA3Q8IX90 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 SPDYE17-201ENST00000412399 783 ntBASIC14.02□□□□□ -0.17
SKA3Q8IX90 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 AL645939.2-201ENST00000427340 991 ntBASIC14.02□□□□□ -0.17
SKA3Q8IX90 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.02□□□□□ -0.17
SKA3Q8IX90 AC125807.1-201ENST00000483097 614 ntBASIC14.02□□□□□ -0.17
SKA3Q8IX90 AC067863.1-201ENST00000494933 530 ntBASIC14.02□□□□□ -0.17
SKA3Q8IX90 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms