Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC144BQ3MJ40 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC144BQ3MJ40 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC144BQ3MJ40 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC144BQ3MJ40 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.33■□□□□ 0.53
CCDC144BQ3MJ40 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC144BQ3MJ40 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC144BQ3MJ40 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CCDC144BQ3MJ40 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.33■□□□□ 0.53
CCDC144BQ3MJ40 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CCDC144BQ3MJ40 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 HLA-V-201ENST00000429037 534 ntBASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 AC011495.1-201ENST00000498085 584 ntBASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CCDC144BQ3MJ40 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 AC055876.2-201ENST00000531834 546 ntBASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 AL109936.8-201ENST00000641772 604 ntBASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CCDC144BQ3MJ40 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 AC006058.4-201ENST00000624016 1670 ntBASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 TPRX2P-201ENST00000535362 881 ntBASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 AC023310.3-201ENST00000557027 670 ntBASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 AC100756.1-201ENST00000562736 682 ntBASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 AC138749.3-201ENST00000567691 622 ntBASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 AC116165.1-201ENST00000611806 668 ntBASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 MIR6069-201ENST00000620069 79 ntBASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC144BQ3MJ40 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms