Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 AC020922.3-201ENST00000595064 547 ntBASIC16.3■□□□□ 0.2
CHD9Q3L8U1 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 AC022211.2-201ENST00000585075 2527 ntBASIC16.3■□□□□ 0.2
CHD9Q3L8U1 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHD9Q3L8U1 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AC026410.1-201ENST00000507366 1101 ntBASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AL022344.2-201ENST00000568976 968 ntBASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 KRT8P29-201ENST00000420409 1371 ntBASIC16.29■□□□□ 0.2
CHD9Q3L8U1 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 ANKRD30BP2-201ENST00000435744 1610 ntBASIC16.29■□□□□ 0.2
CHD9Q3L8U1 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AC006449.6-201ENST00000612330 2296 ntBASIC16.29■□□□□ 0.2
CHD9Q3L8U1 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 SERF2-206ENST00000409291 807 ntTSL 3 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AC009955.4-201ENST00000597192 544 ntBASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AC007718.1-201ENST00000621078 280 ntBASIC16.29■□□□□ 0.2
CHD9Q3L8U1 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHD9Q3L8U1 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 NOC2LP1-201ENST00000450578 752 ntBASIC16.28■□□□□ 0.2
CHD9Q3L8U1 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 TMCO5B-205ENST00000530020 894 ntBASIC16.28■□□□□ 0.2
CHD9Q3L8U1 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms