Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 AC010327.5-201ENST00000586923 3061 ntBASIC14.16□□□□□ -0.14
SCN1BQ07699 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.16□□□□□ -0.14
SCN1BQ07699 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
SCN1BQ07699 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.16□□□□□ -0.14
SCN1BQ07699 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SCN1BQ07699 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.16□□□□□ -0.14
SCN1BQ07699 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.16□□□□□ -0.14
SCN1BQ07699 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC14.16□□□□□ -0.14
SCN1BQ07699 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.16□□□□□ -0.14
SCN1BQ07699 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14.16□□□□□ -0.14
SCN1BQ07699 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC14.16□□□□□ -0.14
SCN1BQ07699 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC14.16□□□□□ -0.14
SCN1BQ07699 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 MIR1199-201ENST00000621445 119 ntBASIC14.16□□□□□ -0.14
SCN1BQ07699 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.16□□□□□ -0.14
SCN1BQ07699 AC107918.4-202ENST00000641623 219 ntBASIC14.16□□□□□ -0.14
SCN1BQ07699 AF228730.7-201ENST00000641842 219 ntBASIC14.16□□□□□ -0.14
SCN1BQ07699 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.16□□□□□ -0.14
SCN1BQ07699 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.16□□□□□ -0.14
SCN1BQ07699 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.16□□□□□ -0.14
SCN1BQ07699 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.16□□□□□ -0.14
SCN1BQ07699 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SCN1BQ07699 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
SCN1BQ07699 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.15□□□□□ -0.14
SCN1BQ07699 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.15□□□□□ -0.14
SCN1BQ07699 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.15□□□□□ -0.14
SCN1BQ07699 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SCN1BQ07699 AC112693.3-201ENST00000624819 1983 ntBASIC14.15□□□□□ -0.14
SCN1BQ07699 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
SCN1BQ07699 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC14.15□□□□□ -0.14
SCN1BQ07699 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SCN1BQ07699 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC14.15□□□□□ -0.14
SCN1BQ07699 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC14.15□□□□□ -0.14
SCN1BQ07699 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.15□□□□□ -0.14
SCN1BQ07699 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
SCN1BQ07699 EMBP1-201ENST00000458200 901 ntBASIC14.15□□□□□ -0.14
SCN1BQ07699 RPS15P9-201ENST00000494093 319 ntBASIC14.15□□□□□ -0.14
SCN1BQ07699 RNPS1P1-201ENST00000507437 918 ntBASIC14.15□□□□□ -0.14
SCN1BQ07699 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.15□□□□□ -0.14
SCN1BQ07699 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC14.15□□□□□ -0.14
SCN1BQ07699 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC14.15□□□□□ -0.14
SCN1BQ07699 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.15□□□□□ -0.14
SCN1BQ07699 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.15□□□□□ -0.14
SCN1BQ07699 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.15□□□□□ -0.14
SCN1BQ07699 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
SCN1BQ07699 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
SCN1BQ07699 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.15□□□□□ -0.14
SCN1BQ07699 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 AC006504.5-208ENST00000588784 2401 ntBASIC14.15□□□□□ -0.14
SCN1BQ07699 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.15□□□□□ -0.14
SCN1BQ07699 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.15□□□□□ -0.14
SCN1BQ07699 AL359183.1-201ENST00000623796 2132 ntBASIC14.15□□□□□ -0.14
SCN1BQ07699 BEND3P1-201ENST00000421591 1944 ntBASIC14.15□□□□□ -0.14
SCN1BQ07699 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SCN1BQ07699 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.15□□□□□ -0.14
SCN1BQ07699 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms