Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX4Q06945 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX4Q06945 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX4Q06945 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX4Q06945 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
SOX4Q06945 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX4Q06945 AL365203.3-201ENST00000609742 2057 ntBASIC16.74■□□□□ 0.27
SOX4Q06945 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX4Q06945 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX4Q06945 AP005117.1-202ENST00000581724 1908 ntBASIC16.74■□□□□ 0.27
SOX4Q06945 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX4Q06945 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SOX4Q06945 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.74■□□□□ 0.27
SOX4Q06945 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX4Q06945 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SOX4Q06945 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
SOX4Q06945 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
SOX4Q06945 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX4Q06945 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX4Q06945 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX4Q06945 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX4Q06945 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX4Q06945 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
SOX4Q06945 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX4Q06945 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.73■□□□□ 0.27
SOX4Q06945 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SOX4Q06945 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX4Q06945 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX4Q06945 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.73■□□□□ 0.27
SOX4Q06945 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.73■□□□□ 0.27
SOX4Q06945 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.73■□□□□ 0.27
SOX4Q06945 AP001889.1-201ENST00000525414 633 ntBASIC16.73■□□□□ 0.27
SOX4Q06945 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX4Q06945 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.73■□□□□ 0.27
SOX4Q06945 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SOX4Q06945 MIR6775-201ENST00000617557 69 ntBASIC16.73■□□□□ 0.27
SOX4Q06945 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.73■□□□□ 0.27
SOX4Q06945 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
SOX4Q06945 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.73■□□□□ 0.27
SOX4Q06945 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SOX4Q06945 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SOX4Q06945 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
SOX4Q06945 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
SOX4Q06945 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
SOX4Q06945 MIR658-201ENST00000385210 100 ntBASIC16.72■□□□□ 0.27
SOX4Q06945 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.72■□□□□ 0.27
SOX4Q06945 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.72■□□□□ 0.27
SOX4Q06945 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.72■□□□□ 0.27
SOX4Q06945 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.72■□□□□ 0.27
SOX4Q06945 BCRP2-202ENST00000447763 634 ntBASIC16.72■□□□□ 0.27
SOX4Q06945 BCRP6-201ENST00000510112 632 ntBASIC16.72■□□□□ 0.27
SOX4Q06945 BCRP7-201ENST00000511549 544 ntBASIC16.72■□□□□ 0.27
SOX4Q06945 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.72■□□□□ 0.27
SOX4Q06945 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.72■□□□□ 0.27
SOX4Q06945 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.72■□□□□ 0.27
SOX4Q06945 AC025181.2-201ENST00000606994 802 ntBASIC16.72■□□□□ 0.27
SOX4Q06945 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.72■□□□□ 0.27
SOX4Q06945 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.72■□□□□ 0.27
SOX4Q06945 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.72■□□□□ 0.27
SOX4Q06945 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.72■□□□□ 0.27
SOX4Q06945 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.72■□□□□ 0.27
SOX4Q06945 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SOX4Q06945 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms