Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.15□□□□□ -0.14
CLRN1P58418 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.15□□□□□ -0.14
CLRN1P58418 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CLRN1P58418 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CLRN1P58418 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CLRN1P58418 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.15□□□□□ -0.14
CLRN1P58418 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.15□□□□□ -0.14
CLRN1P58418 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.15□□□□□ -0.14
CLRN1P58418 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.15□□□□□ -0.14
CLRN1P58418 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
CLRN1P58418 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.15□□□□□ -0.14
CLRN1P58418 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC14.15□□□□□ -0.14
CLRN1P58418 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.14
CLRN1P58418 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 RN7SL828P-201ENST00000607615 303 ntBASIC14.15□□□□□ -0.14
CLRN1P58418 AL691403.2-201ENST00000618460 490 ntBASIC14.15□□□□□ -0.14
CLRN1P58418 LINC00628-201ENST00000628516 1289 ntBASIC14.15□□□□□ -0.14
CLRN1P58418 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.15□□□□□ -0.14
CLRN1P58418 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.15□□□□□ -0.14
CLRN1P58418 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CLRN1P58418 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.15□□□□□ -0.14
CLRN1P58418 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.15□□□□□ -0.14
CLRN1P58418 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
CLRN1P58418 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
CLRN1P58418 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CLRN1P58418 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.14□□□□□ -0.15
CLRN1P58418 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN1P58418 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CLRN1P58418 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN1P58418 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN1P58418 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CLRN1P58418 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.14□□□□□ -0.15
CLRN1P58418 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CLRN1P58418 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.14□□□□□ -0.15
CLRN1P58418 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN1P58418 EEF1DP4-201ENST00000446006 880 ntBASIC14.14□□□□□ -0.15
CLRN1P58418 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN1P58418 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.14□□□□□ -0.15
CLRN1P58418 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
CLRN1P58418 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.14□□□□□ -0.15
CLRN1P58418 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.14□□□□□ -0.15
CLRN1P58418 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.14□□□□□ -0.15
CLRN1P58418 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CLRN1P58418 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.14□□□□□ -0.15
CLRN1P58418 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CLRN1P58418 AC092127.1-201ENST00000567093 3455 ntBASIC14.14□□□□□ -0.15
CLRN1P58418 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLRN1P58418 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.14□□□□□ -0.15
CLRN1P58418 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CLRN1P58418 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
CLRN1P58418 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CLRN1P58418 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.13□□□□□ -0.15
CLRN1P58418 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 AC087481.3-201ENST00000602886 1894 ntBASIC14.13□□□□□ -0.15
CLRN1P58418 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CLRN1P58418 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN1P58418 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CLRN1P58418 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN1P58418 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms