Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.17■□□□□ 0.5
CTCFP49711 CICP6-201ENST00000457191 2729 ntBASIC18.17■□□□□ 0.5
CTCFP49711 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.17■□□□□ 0.5
CTCFP49711 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC18.17■□□□□ 0.5
CTCFP49711 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC18.17■□□□□ 0.5
CTCFP49711 AL139008.1-201ENST00000437894 228 ntBASIC18.17■□□□□ 0.5
CTCFP49711 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC18.17■□□□□ 0.5
CTCFP49711 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 AC244157.2-201ENST00000616239 1006 ntBASIC18.17■□□□□ 0.5
CTCFP49711 AL805961.1-201ENST00000642026 753 ntBASIC18.17■□□□□ 0.5
CTCFP49711 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.17■□□□□ 0.5
CTCFP49711 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.17■□□□□ 0.5
CTCFP49711 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 AL023775.1-201ENST00000454907 1746 ntBASIC18.17■□□□□ 0.5
CTCFP49711 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.17■□□□□ 0.5
CTCFP49711 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
CTCFP49711 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CTCFP49711 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTCFP49711 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CTCFP49711 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.16■□□□□ 0.5
CTCFP49711 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 REXO1L8P-201ENST00000604378 1897 ntBASIC18.16■□□□□ 0.5
CTCFP49711 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CTCFP49711 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.16■□□□□ 0.5
CTCFP49711 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CTCFP49711 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CTCFP49711 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
CTCFP49711 SMS-201ENST00000379404 1174 ntTSL 3 BASIC18.16■□□□□ 0.5
CTCFP49711 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.16■□□□□ 0.5
CTCFP49711 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CTCFP49711 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 AC005740.2-201ENST00000511085 419 ntBASIC18.16■□□□□ 0.5
CTCFP49711 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18.16■□□□□ 0.5
CTCFP49711 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CTCFP49711 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
CTCFP49711 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18.16■□□□□ 0.5
CTCFP49711 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC18.16■□□□□ 0.5
CTCFP49711 AL353770.1-201ENST00000614915 403 ntBASIC18.16■□□□□ 0.5
CTCFP49711 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.16■□□□□ 0.5
CTCFP49711 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.16■□□□□ 0.5
CTCFP49711 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC18.16■□□□□ 0.5
CTCFP49711 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CTCFP49711 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CTCFP49711 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.16■□□□□ 0.5
CTCFP49711 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.16■□□□□ 0.5
CTCFP49711 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTCFP49711 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC18.15■□□□□ 0.5
CTCFP49711 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC18.15■□□□□ 0.5
CTCFP49711 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CTCFP49711 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 AL354989.2-201ENST00000435838 1540 ntBASIC18.15■□□□□ 0.5
CTCFP49711 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CTCFP49711 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 AL512430.1-201ENST00000392575 860 ntBASIC18.15■□□□□ 0.5
CTCFP49711 AC074338.1-201ENST00000416825 156 ntBASIC18.15■□□□□ 0.5
CTCFP49711 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC18.15■□□□□ 0.5
CTCFP49711 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC18.15■□□□□ 0.5
CTCFP49711 AL022344.2-201ENST00000568976 968 ntBASIC18.15■□□□□ 0.5
CTCFP49711 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.15■□□□□ 0.5
CTCFP49711 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.15■□□□□ 0.5
CTCFP49711 AC092171.5-201ENST00000608012 942 ntBASIC18.15■□□□□ 0.5
CTCFP49711 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC18.15■□□□□ 0.5
CTCFP49711 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTCFP49711 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms