Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.92□□□□□ -0.02
SOX3P41225 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
SOX3P41225 HLA-V-204ENST00000476601 1289 ntBASIC14.92□□□□□ -0.02
SOX3P41225 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.92□□□□□ -0.02
SOX3P41225 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.92□□□□□ -0.02
SOX3P41225 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.92□□□□□ -0.02
SOX3P41225 MIR4321-201ENST00000592276 80 ntBASIC14.92□□□□□ -0.02
SOX3P41225 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 AC026979.3-201ENST00000607315 403 ntBASIC14.92□□□□□ -0.02
SOX3P41225 AL133215.2-201ENST00000609242 977 ntBASIC14.92□□□□□ -0.02
SOX3P41225 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
SOX3P41225 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.92□□□□□ -0.02
SOX3P41225 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.92□□□□□ -0.02
SOX3P41225 LINC02447-202ENST00000501888 2146 ntBASIC14.92□□□□□ -0.02
SOX3P41225 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 AC100757.3-201ENST00000622361 1406 ntBASIC14.92□□□□□ -0.02
SOX3P41225 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SOX3P41225 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SOX3P41225 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.91□□□□□ -0.02
SOX3P41225 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.91□□□□□ -0.02
SOX3P41225 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SOX3P41225 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
SOX3P41225 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.91□□□□□ -0.02
SOX3P41225 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
SOX3P41225 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.91□□□□□ -0.02
SOX3P41225 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX3P41225 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.91□□□□□ -0.02
SOX3P41225 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.91□□□□□ -0.02
SOX3P41225 FAM8A3P-201ENST00000427218 844 ntBASIC14.91□□□□□ -0.02
SOX3P41225 AC241585.1-201ENST00000433527 519 ntBASIC14.91□□□□□ -0.02
SOX3P41225 AL512638.1-201ENST00000457493 794 ntBASIC14.91□□□□□ -0.02
SOX3P41225 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.91□□□□□ -0.02
SOX3P41225 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.91□□□□□ -0.02
SOX3P41225 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.91□□□□□ -0.02
SOX3P41225 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
SOX3P41225 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.91□□□□□ -0.02
SOX3P41225 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.91□□□□□ -0.02
SOX3P41225 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SOX3P41225 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 CDC14C-201ENST00000428251 1719 ntBASIC14.91□□□□□ -0.02
SOX3P41225 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX3P41225 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
SOX3P41225 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
SOX3P41225 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX3P41225 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SOX3P41225 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
SOX3P41225 AC006058.4-201ENST00000624016 1670 ntBASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms